{"id":"W4361208567","doi":"10.1101/2023.03.27.534433","title":"Evolution of an alternative genetic code in the <i>Providencia</i> symbiont of the haematophagous leech <i>Haementeria acuecueyetzin</i>","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Leech Biology and Applications","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Universidad Nacional Autónoma de México; Hospital for Sick Children; European Commission","keywords":"Biology; Genome; Leech; Providencia; Evolutionary biology; Symbiotic bacteria; Genetics; Lineage (genetic); Zoology; Symbiosis; Bacteria; Gene; Enterobacteriaceae; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009337386,0.0002048211,0.0001691343,0.0004344213,0.0002788723,0.0003803176,0.000197138,0.0003589624,0.000692996],"category_scores_gemma":[0.0001888563,0.000143421,0.0002279431,0.0002608869,0.0002486406,0.0001621735,0.0004304512,0.0003187237,0.0002716002],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002885019,"about_ca_system_score_gemma":0.0001787068,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008674779,"about_ca_topic_score_gemma":0.001361309,"domain_scores_codex":[0.9999162,0.000009555229,0.000005609151,0.00003441364,0.00001562283,0.00001862751],"domain_scores_gemma":[0.9997688,0.00004021427,0.00008617607,0.00003351751,0.00002961198,0.00004172523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008679758,0.000009546045,0.003771518,0.00003615347,0.000008612857,0.0001591644,0.00006113878,0.00003817453,0.9944213,0.00007405926,0.00001848071,0.001315079],"study_design_scores_gemma":[0.00004742064,0.0007477539,0.6994411,0.00006849927,0.0001272075,0.002712225,0.0006645249,0.002351201,0.2846338,0.0001966544,0.008962672,0.00004697191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986267,0.0001535725,0.0005373283,0.00002530945,0.000006013988,0.000007418852,0.0002026527,0.0000287069,0.0004122386],"genre_scores_gemma":[0.9973877,0.00008908318,0.001133526,0.00004464857,0.000005879675,0.00001338879,0.0006835725,0.00002226493,0.00061988],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008674779,"threshold_uncertainty_score":0.002318323,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02294637932331497,"score_gpt":0.2637424725777323,"score_spread":0.2407960932544173,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}