{"id":"W4361225079","doi":"10.3138/jammi-2022-0024","title":"Retrospective testing for the presence of monkeypox virus in a high-risk population from February–June 2022 in Alberta, Canada","year":2023,"lang":"en","type":"article","venue":"Journal of the Association of Medical Microbiology and Infectious Disease Canada","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Health; Calgary Laboratory Services; Government of Alberta; Alberta Health Services; University of Calgary; University of Alberta","funders":"Li Ka Shing Institute of Virology, University of Alberta; Cumming School of Medicine, University of Calgary; University of Alberta; Alberta Health Services; Government of Alberta; Faculty of Medicine and Dentistry, University of Alberta; Alberta Precision Laboratories","keywords":"Monkeypox; Syphilis; Medicine; Epidemiology; Outbreak; Population; Virology; Context (archaeology); Orthopoxvirus; Demography; Environmental health; Internal medicine; Biology; Human immunodeficiency virus (HIV); Vaccinia","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003513651,0.0004573364,0.0002272857,0.001436929,0.002267379,0.0009273279,0.0009700712,0.0004272595,0.001005816],"category_scores_gemma":[0.001068072,0.000357331,0.0002117989,0.001529262,0.0008178709,0.0002201683,0.0005845697,0.0005766697,0.0002024701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007205414,"about_ca_system_score_gemma":0.007004332,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9185357,"about_ca_topic_score_gemma":0.9298339,"domain_scores_codex":[0.9992361,0.00004236433,0.00003416689,0.00008738144,0.0003961757,0.0002037893],"domain_scores_gemma":[0.9989705,0.00005329498,0.0001724626,0.00002725636,0.0005028821,0.0002735886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003839454,0.00002738382,0.996888,0.00001043174,0.000008787806,0.0008051898,0.0004978215,0.00004279881,0.000573111,0.000009238033,0.0002340642,0.0008647284],"study_design_scores_gemma":[0.000002158337,0.0000662915,0.9968613,0.00001085329,0.000008488953,0.0007645197,0.001689501,0.0000889384,0.0001503253,0.000003952453,0.0003494589,0.00000417175],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976312,0.0001485718,0.00004598844,0.00005987484,0.000006691102,0.00004173047,0.0005336434,0.000005650073,0.001526628],"genre_scores_gemma":[0.9988281,0.0001597635,0.00009378378,0.0000751603,0.00000497548,0.000008504388,0.0004404414,0.000001914068,0.0003873118],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08146429,"threshold_uncertainty_score":0.163888,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005342652486618564,"score_gpt":0.2239362108172054,"score_spread":0.2185935583305869,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}