{"id":"W4361279622","doi":"10.1186/s13104-023-06315-0","title":"Isolation and multilocus sequence typing of Borrelia burgdorferi from Ixodes scapularis collected from dogs in Ontario, Canada","year":2023,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"OVC Pet Trust; Public Health Agency; Public Health Agency of Canada; University of Guelph","keywords":"Ixodes scapularis; Borrelia burgdorferi; Multilocus sequence typing; Isolation (microbiology); Lyme disease; Biology; Microbiology; Borrelia; Ixodes; Virology; Typing; Medicine; Genetics; Genotype; Antibody","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003599802,0.0001314921,0.000267304,0.0002815111,0.0001873751,0.0000275692,0.0001776412,0.0001735915,0.0006324961],"category_scores_gemma":[0.002108648,0.0001313152,0.00003151134,0.0006192721,0.0002257173,0.00009662332,0.0001674448,0.0004442286,0.00004941498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004049762,"about_ca_system_score_gemma":0.001774555,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9987167,"about_ca_topic_score_gemma":0.9990193,"domain_scores_codex":[0.9982803,0.0005145738,0.0002864285,0.00037603,0.0001096516,0.0004330078],"domain_scores_gemma":[0.9967598,0.002652366,0.00006576014,0.0002721648,0.0002061351,0.00004379072],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001926348,0.0000332509,0.7156573,0.00001173309,0.00005380371,0.00001103375,0.0004547907,0.00008177538,0.2819121,0.00001644554,0.001228238,0.0003468715],"study_design_scores_gemma":[0.0008162237,0.00006400762,0.971907,0.0000985131,0.00001159625,0.000001424896,0.0002329004,0.0004993542,0.02523294,0.0006042335,0.0004021453,0.0001296376],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977359,0.001234495,0.00004421079,0.00008079557,0.0002452601,0.0003022365,0.0002422087,0.00005134109,0.00006356084],"genre_scores_gemma":[0.9989435,0.00006750059,0.0001508401,0.0000131422,0.00001810975,0.00004076629,0.0004705261,0.00001561467,0.0002799759],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2566792,"threshold_uncertainty_score":0.6925389,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08683680560490697,"score_gpt":0.3285396804751813,"score_spread":0.2417028748702744,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}