{"id":"W4361297857","doi":"10.1186/s40168-023-01496-z","title":"Gut commensal Enterocloster species host inoviruses that are secreted in vitro and in vivo","year":2023,"lang":"en","type":"article","venue":"Microbiome","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia Hospital; Canadian Institute for Advanced Research; University of British Columbia","funders":"Michael Smith Health Research BC; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Canadian Institute for Advanced Research","keywords":"Biology; Microbiology; Secretion; Biofilm; Prophage; Bacteria; In vivo; In vitro; Escherichia coli; Bacteriophage; Genetics; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007759764,0.000136935,0.0001622373,0.0001701909,0.00005370518,0.00006824017,0.0001286346,0.0000637823,0.001342563],"category_scores_gemma":[0.000005321459,0.0001334624,0.0000329063,0.0003833175,0.0001114387,0.0002297018,0.0003217927,0.0001353475,0.0005330289],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001416478,"about_ca_system_score_gemma":0.000002559274,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006342053,"about_ca_topic_score_gemma":0.002391838,"domain_scores_codex":[0.9991842,0.00003581298,0.0001704722,0.0002620293,0.00004985688,0.0002976547],"domain_scores_gemma":[0.9997322,0.00002822519,0.00005100479,0.0001421249,0.000002503737,0.00004394006],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003935725,0.00003694666,0.03192672,0.000008106713,0.000003534848,0.00003847955,0.0004994351,0.00000135492,0.9620064,3.075257e-7,0.005333402,0.0001059213],"study_design_scores_gemma":[0.0004572972,0.00001376003,0.6522437,0.00004431203,0.000002894649,0.00002586567,0.0004809049,0.00001193336,0.3072501,0.000004094391,0.03930691,0.0001581338],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980534,0.00001789129,0.000002464091,0.0008606862,0.0001749775,0.0001483727,0.000183996,0.00004085583,0.0005173036],"genre_scores_gemma":[0.9967229,0.00004060241,0.00005546377,0.0007469933,0.00001708413,0.000009508462,0.00002847585,0.00001545104,0.002363457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6547563,"threshold_uncertainty_score":0.9995704,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0216908901606263,"score_gpt":0.232751953196012,"score_spread":0.2110610630353857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}