{"id":"W4362522833","doi":"10.1128/aem.01306-22","title":"Adaptive Radioresistance of Enterohemorrhagic Escherichia coli O157:H7 Results in Genomic Loss of Shiga Toxin-Encoding Prophages","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Génome Québec; Natural Sciences and Engineering Research Council of Canada; Mitacs; McGill University","keywords":"Prophage; Shiga toxin; Escherichia coli; Biology; Lysogenic cycle; Microbiology; Genetics; Bacteriophage; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001755823,0.0003376735,0.0002209387,0.0001861379,0.00009755554,0.0002458549,0.0003184795,0.0003531074,0.0007454036],"category_scores_gemma":[0.0001940379,0.0001189622,0.0002453353,0.0001751316,0.0002004046,0.0001020168,0.0003197579,0.0006371335,0.0002042904],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002062499,"about_ca_system_score_gemma":0.0002039712,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000572162,"about_ca_topic_score_gemma":0.0007369543,"domain_scores_codex":[0.9998609,0.00002478391,0.00001393279,0.00001951124,0.00004494595,0.00003587993],"domain_scores_gemma":[0.9998651,0.00003280231,0.00003523237,0.00002170442,0.00001855111,0.00002650424],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003737654,0.00004181134,0.0004635046,0.00001201538,0.00000584799,0.00004870387,0.00002049828,0.00009066225,0.9981823,0.00007008676,0.00001133598,0.00101592],"study_design_scores_gemma":[0.00002281703,0.0007470538,0.01799914,0.00001384517,0.00002647842,0.0004837316,0.000154577,0.00176701,0.9773685,0.00007277779,0.001332576,0.00001146579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982113,0.0001092605,0.001089415,0.00003547465,0.0000057229,0.0000146403,0.00009212542,0.00001933193,0.000422748],"genre_scores_gemma":[0.9958319,0.0001846068,0.001960759,0.00004237006,0.000003400952,0.00002288865,0.0003191543,0.00002769368,0.001607205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007454036,"threshold_uncertainty_score":0.00249368,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008657216621801304,"score_gpt":0.2126250721910725,"score_spread":0.2039678555692712,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}