{"id":"W4362596960","doi":"10.1158/1538-7445.am2023-3039","title":"Abstract 3039: Evaluation of intra-tumoral pks+ <i>E. coli</i>, enterotoxigenic <i>B. fragilis</i> and <i>Fusobacterium nucleatum,</i> overall and in early onset disease, in colorectal cancer cases","year":2023,"lang":"en","type":"article","venue":"Cancer Research","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"","keywords":"Colorectal cancer; Fusobacterium nucleatum; Bacteroides fragilis; Hazard ratio; Cancer; Internal medicine; Medicine; Carcinogenesis; Oncology; Microbiome; Microsatellite instability; Proportional hazards model; Biology; Gastroenterology; Cancer research; Bioinformatics; Genetics; Confidence interval; Microsatellite; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006609166,0.0002495345,0.0002229134,0.0009709612,0.0002697655,0.0003573692,0.0002651155,0.0003991916,0.001556074],"category_scores_gemma":[0.001673858,0.000163868,0.0003154324,0.0009135698,0.0002628807,0.0002241264,0.0002914037,0.00024034,0.0004366348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003303832,"about_ca_system_score_gemma":0.000238833,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002969468,"about_ca_topic_score_gemma":0.002891355,"domain_scores_codex":[0.999558,0.0001284356,0.00004877801,0.0001183101,0.00008239548,0.00006407494],"domain_scores_gemma":[0.9986452,0.000297461,0.0005057657,0.00008391336,0.0002176502,0.0002499976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000315885,0.00001573,0.9953073,0.00001810398,0.00001955263,0.0001001905,0.00002408813,0.00004612801,0.003027879,0.000006214775,0.00005797933,0.001060934],"study_design_scores_gemma":[0.000006122435,0.0002726792,0.9964709,0.000006132463,0.00004374399,0.0006872803,0.0001017523,0.000366732,0.001773093,0.00001489234,0.0002534705,0.00000316872],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987335,0.0001368838,0.0001777193,0.00001775604,0.000002864661,0.000008074519,0.0005781449,0.000007203226,0.0003378315],"genre_scores_gemma":[0.9988608,0.00004059521,0.0002762515,0.00001065738,0.000003050113,0.000008187669,0.0006275106,0.000003433395,0.0001694824],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002969468,"threshold_uncertainty_score":0.005904377,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05201235432976069,"score_gpt":0.3881816804254809,"score_spread":0.3361693260957202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}