{"id":"W4362634678","doi":"10.1038/s41598-023-32669-3","title":"Connectome and regulatory hubs of CAGE highly active enhancers","year":2023,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec; Université Laval","funders":"Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; Université Laval","keywords":"Enhancer; Chromatin; Biology; Enhancer RNAs; Gene; Genetics; Transcription factor; Promoter; Epigenetics; Regulation of gene expression; Computational biology; ChIA-PET; Gene expression; Chromatin remodeling","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001425869,0.0001428291,0.0001672139,0.0009564378,0.0001727739,0.0002642794,0.0001353032,0.0001842104,0.002526646],"category_scores_gemma":[0.000384245,0.000164729,0.0001685238,0.0004564343,0.0002397979,0.0002286878,0.0003314148,0.0002167025,0.0003594278],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001033232,"about_ca_system_score_gemma":0.00009091781,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002937101,"about_ca_topic_score_gemma":0.0005373135,"domain_scores_codex":[0.9998882,0.00001293937,0.000003834991,0.00005099341,0.00002359996,0.00002044916],"domain_scores_gemma":[0.9995767,0.0001199967,0.0001515601,0.00004064151,0.00003565351,0.0000754656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006693031,0.00006265622,0.0870754,0.0001742296,0.0001192548,0.000735099,0.0003341,0.001954965,0.8826714,0.004380279,0.0004023526,0.02142094],"study_design_scores_gemma":[0.00005766705,0.0002272701,0.8710324,0.000033652,0.0001412321,0.003002041,0.0002322405,0.01208798,0.1016343,0.005463018,0.006054225,0.00003396242],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99098,0.0005726811,0.006262131,0.00002991947,0.000004814127,0.000009675931,0.0005920083,0.00009179393,0.001456933],"genre_scores_gemma":[0.9958565,0.0001352957,0.002257112,0.00001859925,0.00001082392,0.00001941312,0.0009183914,0.00001942934,0.0007644413],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002526646,"threshold_uncertainty_score":0.008452475,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00555110443670903,"score_gpt":0.2223693672022003,"score_spread":0.2168182627654913,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}