{"id":"W4362696984","doi":"10.1016/j.xgen.2023.100292","title":"Transposable elements are associated with the variable response to influenza infection","year":2023,"lang":"en","type":"article","venue":"Cell Genomics","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; McGill University","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Institute of Genetics; Canada Research Chairs; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Immune system; Transcriptome; Epigenetics; Influenza A virus; Immunology; Viral load; Transposable element; Virology; Genetics; Chromatin; Virus; Genome; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001642332,0.0001271999,0.0001853927,0.0003833201,0.0001124609,0.000183443,0.0001124134,0.0002227988,0.000886989],"category_scores_gemma":[0.0004612197,0.00009092517,0.0001554019,0.0003273221,0.0001740202,0.00008386158,0.0001915628,0.0002305757,0.0001365634],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008894775,"about_ca_system_score_gemma":0.00005849184,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005332939,"about_ca_topic_score_gemma":0.0007590045,"domain_scores_codex":[0.9998127,0.00003113311,0.00001550079,0.00007064584,0.00003442721,0.00003568295],"domain_scores_gemma":[0.9996312,0.00008058178,0.0001770644,0.00003057449,0.00003030561,0.00005031938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007296035,0.00003197615,0.2279868,0.00006656475,0.0001203845,0.0003799121,0.0002438388,0.0001944432,0.7618234,0.0001317974,0.0001096697,0.008181562],"study_design_scores_gemma":[0.000004549333,0.0001310696,0.9781415,0.000005235151,0.0000355919,0.001267989,0.0001035142,0.0004517318,0.01927625,0.0001494694,0.0004245045,0.000008435044],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988378,0.0002652398,0.0005496591,0.00001386847,0.000002116845,0.000003187364,0.0001831117,0.000009455609,0.0001355931],"genre_scores_gemma":[0.9993227,0.0000696257,0.0002578972,0.00001259733,0.000003055658,0.000003042852,0.0001528736,0.000004119633,0.0001741666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000886989,"threshold_uncertainty_score":0.002967238,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01362675831128121,"score_gpt":0.2384521285454123,"score_spread":0.224825370234131,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}