{"id":"W4362728512","doi":"10.17504/protocols.io.rm7vzbm3xvx1/v1","title":"Single strain culture DNA extractions with polyzyme v1","year":2022,"lang":"en","type":"preprint","venue":"","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Strain (injury); DNA; Chemistry; Genetics; Biology; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008175985,0.000224071,0.0001669328,0.00004568118,0.0001221757,0.00006270529,0.0002243148,0.0002599034,0.0008534287],"category_scores_gemma":[0.0000268959,0.0001840145,0.0001343932,0.00009338582,0.00004576982,0.000002927724,0.0003607229,0.0002844584,0.000006291013],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003768989,"about_ca_system_score_gemma":0.0001253222,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000269924,"about_ca_topic_score_gemma":0.0001355605,"domain_scores_codex":[0.998872,0.00004868593,0.0001881546,0.0005528068,0.0001661652,0.0001721869],"domain_scores_gemma":[0.9990991,0.00000335913,0.0001353094,0.0005997719,0.00009972844,0.00006276307],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002761461,0.0002014894,0.0001699099,0.00002959559,0.0001426805,0.00000282784,0.00006958365,0.001264197,0.9858842,0.0001749659,0.01153541,0.0004974889],"study_design_scores_gemma":[0.0003224654,0.0004858855,0.00050933,0.00002204811,0.0001289441,0.0000294198,0.0008159256,0.0000509099,0.5064242,0.00008544092,0.490553,0.0005724261],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8551434,0.004789597,0.0328991,0.0009906143,0.001107685,0.001386337,0.001429907,0.0001857763,0.1020676],"genre_scores_gemma":[0.9329405,0.000273095,0.001975892,0.0003959636,0.000401462,0.0001583845,0.01599322,0.00006102874,0.04780044],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4794601,"threshold_uncertainty_score":0.9344445,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01426716838261511,"score_gpt":0.2543212148121727,"score_spread":0.2400540464295576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}