{"id":"W4365150401","doi":"10.1099/acmi.0.000539.v2","title":"A multiphasic approach to solve misidentification of Cutibacterium acnes as Atopobium vaginae during routine bacterial screening of platelet concentrates using the VITEK 2 system","year":2023,"lang":"en","type":"preprint","venue":"","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Canadian Blood Services","funders":"Health Canada; Canadian Blood Services","keywords":"Microbiology; Biology; Bacterial vaginosis; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007414691,0.000374813,0.0005597505,0.0001215416,0.0001601149,0.0001759071,0.0006471212,0.0003839329,0.00001628603],"category_scores_gemma":[0.0003285393,0.0003271729,0.0002511317,0.0002155601,0.0001827983,0.0000119704,0.0008774269,0.0002163,0.00000618209],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005641288,"about_ca_system_score_gemma":0.0001700592,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001144293,"about_ca_topic_score_gemma":0.00004460173,"domain_scores_codex":[0.9971748,0.0001938905,0.001105641,0.0009005428,0.0002733515,0.0003517827],"domain_scores_gemma":[0.9973233,0.00004497303,0.0008513552,0.001120677,0.0005517589,0.0001079147],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002127798,0.00008086333,0.002081439,0.0009749171,0.0001835798,9.002658e-7,0.0006008664,0.001376247,0.9942911,0.00009418401,0.00003373628,0.00006936568],"study_design_scores_gemma":[0.000618446,0.00004539598,0.01742298,0.0003791224,0.00010629,0.00002367678,0.002362492,0.003425548,0.9751793,0.00001238812,0.0000486225,0.0003757028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9823421,0.00005956556,0.0150133,0.00007287987,0.001026993,0.001114726,0.0001998748,0.00007695841,0.00009356789],"genre_scores_gemma":[0.9901139,0.00001380031,0.007748476,0.00001251904,0.0004361782,0.0000626316,0.001264115,0.00006528371,0.000283064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01911179,"threshold_uncertainty_score":0.999918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04841929073553315,"score_gpt":0.2937068146998714,"score_spread":0.2452875239643383,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}