{"id":"W4366083582","doi":"10.1093/molbev/msad090","title":"Dynamic Evolution of Retroviral Envelope Genes in Egg-Laying Mammalian Genomes","year":2023,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Hokkaido University","keywords":"Biology; ORFS; Genome; Gene; Endogenous retrovirus; Platypus; Genetics; Open reading frame; Virology; Peptide sequence; Zoology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001508294,0.0001525792,0.0001696324,0.0006996772,0.0002539059,0.0004076984,0.0001884286,0.0003193683,0.0003692556],"category_scores_gemma":[0.0003130074,0.0001629745,0.0002150249,0.0004931481,0.0002213546,0.0003110179,0.0002994636,0.0003065355,0.0002123746],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000315109,"about_ca_system_score_gemma":0.0001255231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003942767,"about_ca_topic_score_gemma":0.0004477644,"domain_scores_codex":[0.9998654,0.00001516615,0.00001071843,0.00005102635,0.00003576186,0.00002192401],"domain_scores_gemma":[0.9997784,0.00004712657,0.00009960305,0.00001767744,0.00002512851,0.00003201077],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001148411,0.00001365572,0.007982557,0.00003635295,0.00001191646,0.0002429012,0.0001290987,0.0002063191,0.9861855,0.0003578661,0.00002226691,0.00469681],"study_design_scores_gemma":[0.00006809171,0.0006408105,0.5427533,0.00009970448,0.0002136107,0.006553998,0.0008426537,0.01308677,0.4200117,0.001728481,0.01393945,0.00006142925],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979367,0.000416655,0.001058178,0.00001459101,0.000002190239,0.000007403382,0.0001114939,0.00001527849,0.000437578],"genre_scores_gemma":[0.9955023,0.0003966688,0.002682579,0.00002705419,0.000005127336,0.00001321028,0.0008561084,0.0000119228,0.000505076],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006996772,"threshold_uncertainty_score":0.002286315,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008508255570284437,"score_gpt":0.2300288868614455,"score_spread":0.2215206312911611,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}