{"id":"W4366083673","doi":"10.1128/mra.00097-23","title":"Complete Genome Sequence of an Endemic Mycobacterium bovis Strain from Wood Bison in Wood Buffalo National Park, Canada","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Parks Canada; Canadian Food Inspection Agency","funders":"Parks Canada; Canadian Food Inspection Agency","keywords":"Mycobacterium bovis; Wildlife; National park; Bovine tuberculosis; Whole genome sequencing; Livestock; Biology; Strain (injury); Tuberculosis; Veterinary medicine; Genome; Mycobacterium tuberculosis; Ecology; Medicine; Genetics; Gene; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005221691,0.0002523027,0.0005169729,0.0003160365,0.0000776161,0.0000176296,0.0003523079,0.0001826415,0.0004286644],"category_scores_gemma":[0.0002001771,0.0002233628,0.00006652843,0.0005751649,0.0001727654,0.00008604964,0.0001658287,0.0003465907,0.000075542],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004749475,"about_ca_system_score_gemma":0.0009758222,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.121385,"about_ca_topic_score_gemma":0.08934386,"domain_scores_codex":[0.9975287,0.0002492639,0.000564798,0.0005709845,0.0003344302,0.0007518259],"domain_scores_gemma":[0.9988387,0.0002065875,0.000165456,0.0003658902,0.0001907697,0.0002325743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002910593,0.0001225476,0.08456427,0.00005307922,0.0001147789,0.0001402678,0.0002325706,0.00002028751,0.906574,0.000003824752,0.007637074,0.0002462439],"study_design_scores_gemma":[0.004328245,0.0009215741,0.2545272,0.0002273141,0.00004775954,0.00007462967,0.0008191649,0.0001769404,0.003174789,0.00007365014,0.7351502,0.0004785324],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9383289,0.0001549708,0.000002135901,0.0007826078,0.0001217933,0.0004197534,0.0597642,0.00004096273,0.0003847456],"genre_scores_gemma":[0.9141729,0.0001108248,0.0001307856,0.001465308,0.000156541,0.00006880605,0.08345696,0.00002971055,0.0004081886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9033992,"threshold_uncertainty_score":0.9272732,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04567481206848658,"score_gpt":0.2938492169015678,"score_spread":0.2481744048330813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}