{"id":"W4366088623","doi":"10.1101/2023.04.14.536919","title":"SINGLE CELL RESOLUTION OF THE ADULT ZEBRAFISH INTESTINE UNDER CONVENTIONAL CONDITIONS, AND IN RESPONSE TO AN ACUTE <i>VIBRIO CHOLERAE</i> INFECTION","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Faculty of Medicine and Dentistry, University of Alberta; Directorate for Biological Sciences; Canadian Institutes of Health Research; Alberta Innovates","keywords":"Vibrio cholerae; Zebrafish; Biology; Pathogen; Microbiology; Immune system; Interferon; Vibrio; Cholera; Population; Immunology; Bacteria; Gene; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009404209,0.0001820645,0.0001507964,0.000240252,0.0002591392,0.0002350683,0.0001517937,0.0003300133,0.001847341],"category_scores_gemma":[0.0000690202,0.0001344427,0.0001635112,0.0001181486,0.0002867841,0.0001514912,0.0003064394,0.0005205128,0.0005570679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004684162,"about_ca_system_score_gemma":0.0002217098,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004639337,"about_ca_topic_score_gemma":0.01190206,"domain_scores_codex":[0.9999404,0.000001851118,0.00000295408,0.00002114782,0.0000181254,0.00001547131],"domain_scores_gemma":[0.9999369,0.000008531644,0.00001392741,0.000005748704,0.00001645013,0.00001842646],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001536838,0.000002115898,0.000301175,0.00001248096,0.000001042074,0.00002629104,0.00001844362,0.00002776024,0.9991987,0.00003976626,0.00005147771,0.0003053707],"study_design_scores_gemma":[0.00002818498,0.0002144757,0.1472097,0.00003353432,0.00002607182,0.0004621137,0.000418093,0.00386814,0.8382476,0.0003489698,0.009115414,0.00002768631],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9733741,0.001051522,0.01195956,0.0003281312,0.00009197491,0.00007308856,0.005617519,0.0002831006,0.007220919],"genre_scores_gemma":[0.965234,0.0008238304,0.01536657,0.0003960337,0.00003251601,0.000144126,0.003287661,0.000153459,0.01456166],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004639337,"threshold_uncertainty_score":0.009224653,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01685797780401807,"score_gpt":0.2553624393681198,"score_spread":0.2385044615641017,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}