{"id":"W4366176885","doi":"10.3389/fvets.2023.1146626","title":"Metabolic signature of Mycobacterium avium subsp. paratuberculosis infected and infectious dairy cattle by integrating nuclear magnetic resonance analysis and blood indices","year":2023,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Ministero della Salute","keywords":"Paratuberculosis; Biology; Herd; Dairy cattle; Feces; Mycobacterium; Microbiology; Bacteria; Animal science; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006875884,0.0002126332,0.0005569328,0.001707737,0.0001699795,0.00009915143,0.0002181137,0.0001245978,0.00004624797],"category_scores_gemma":[0.0005506972,0.0001890709,0.00006963244,0.006517495,0.0008848614,0.0004429318,0.0002665865,0.0003351652,0.000002951888],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003676693,"about_ca_system_score_gemma":0.0001236087,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003289123,"about_ca_topic_score_gemma":0.00001733223,"domain_scores_codex":[0.9979486,0.0001237774,0.000330747,0.0006023848,0.0004623095,0.0005321525],"domain_scores_gemma":[0.9990275,0.0001238859,0.0001078195,0.0003391211,0.0001186702,0.0002830288],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001037695,0.0001069136,0.8088296,0.0001182784,0.00007345798,0.0000664092,0.0009405038,0.000001959628,0.1822934,0.00001548307,0.0008345246,0.006615719],"study_design_scores_gemma":[0.0007236984,0.001387378,0.9909448,0.0001041644,0.0002280129,0.00005640744,0.0004216791,0.001213548,0.002737014,0.00003415757,0.001960528,0.000188618],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908157,0.008163177,0.00001861949,0.0001148551,0.0001725614,0.0002799867,0.0000687713,0.00006754373,0.0002987878],"genre_scores_gemma":[0.9926093,0.005724847,0.001407507,0.00008175397,0.00002580294,0.00002819348,0.00003101186,0.00001670399,0.00007492393],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1821152,"threshold_uncertainty_score":0.7710088,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008510226206301989,"score_gpt":0.2601796477621461,"score_spread":0.2516694215558441,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}