{"id":"W4366198744","doi":"10.1038/s42003-023-04781-7","title":"Global transcriptome analysis of allopolyploidization reveals large-scale repression of the D-subgenome in synthetic hexaploid wheat","year":2023,"lang":"en","type":"article","venue":"Communications Biology","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Genome Prairie; Genome Canada","keywords":"Aegilops tauschii; Biology; Germplasm; Transcriptome; Ploidy; Genome; Gene; Genetics; Alternative splicing; Epistasis; Computational biology; Gene expression; Exon; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004095283,0.00007055097,0.0002535307,0.00005284432,0.000111894,0.00000360215,0.0007336606,0.0001220449,0.00005856972],"category_scores_gemma":[0.00004534296,0.00002791651,0.000139407,0.002551873,0.0001945777,0.00001623322,0.0002394553,0.00006205675,0.000003008598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001205615,"about_ca_system_score_gemma":0.000007530297,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001769845,"about_ca_topic_score_gemma":0.00424812,"domain_scores_codex":[0.9988742,0.0004012672,0.0003467765,0.0001622234,0.00005619274,0.0001593283],"domain_scores_gemma":[0.9992085,0.0001675879,0.0001189716,0.000416238,0.00006600101,0.00002270692],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00000893476,0.0001042462,0.2877905,0.00000405511,0.00003567567,7.744101e-8,0.0002499181,0.000104499,0.7063742,0.001710136,0.00003055336,0.00358713],"study_design_scores_gemma":[0.0001058263,0.00008983638,0.9899156,0.00002007133,0.0001086769,8.760267e-7,0.0003410243,0.00140063,0.00265521,0.002633536,0.002646338,0.00008239199],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962118,0.0008982001,0.00001855555,0.00176524,0.00005531452,0.0001347983,0.000282416,0.0000173328,0.000616375],"genre_scores_gemma":[0.9981642,0.001296207,0.00009499706,0.00005454235,0.000008892728,0.00001651567,0.0003091684,5.813063e-7,0.00005490355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.703719,"threshold_uncertainty_score":0.237055,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03266366400580929,"score_gpt":0.2862165165019088,"score_spread":0.2535528524960995,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}