{"id":"W4366351064","doi":"10.1128/aem.00421-23","title":"Longitudinal Study of <i>Lactococcus</i> Phages in a Canadian Cheese Factory","year":2023,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agropur cooperative; Université de Montréal; Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Novalait; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Canadian Dairy Commission","keywords":"Biology; Multilocus sequence typing; Lactococcus lactis; Virulence; Microbiology; Lactococcus; Bacteriophage; Siphoviridae; Typing; Phage typing; Bacteria; Plasmid; Genetics; Genotype; Escherichia coli; DNA; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009979864,0.0006199527,0.000333139,0.001281879,0.003304795,0.0009906169,0.0008783265,0.0006893777,0.001671512],"category_scores_gemma":[0.001179225,0.0003543815,0.0004642714,0.001175505,0.0007689895,0.0003847611,0.0008751683,0.0009332075,0.000437658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01205389,"about_ca_system_score_gemma":0.008603517,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8865269,"about_ca_topic_score_gemma":0.9011905,"domain_scores_codex":[0.9988282,0.000096159,0.00002665161,0.0002676022,0.0002486667,0.0005327649],"domain_scores_gemma":[0.9978668,0.00007805583,0.0002779154,0.0001043624,0.0008296295,0.0008432751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004109431,0.000555896,0.9796269,0.0000205929,0.0000600171,0.0004845468,0.002654511,0.00006538721,0.008647724,0.00009463687,0.0007340123,0.006644815],"study_design_scores_gemma":[0.000005305167,0.0003362586,0.9957445,0.000008567679,0.00001627543,0.0001160492,0.002423227,0.0000955129,0.0004168968,0.00001179247,0.0008097927,0.00001586122],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981432,0.0001195462,0.0001355538,0.00008546995,0.000006272739,0.00005375619,0.0006011959,0.000009616634,0.0008453081],"genre_scores_gemma":[0.9957912,0.0001861255,0.0002672584,0.0001639791,0.000004300842,0.00003520633,0.0007877765,0.000008027349,0.002755983],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1134731,"threshold_uncertainty_score":0.2282826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01100438390229695,"score_gpt":0.2218126091605149,"score_spread":0.2108082252582179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}