{"id":"W4366602029","doi":"10.1007/s10096-023-04606-9","title":"Genomic characterization of emerging invasive Streptococcus agalactiae serotype VIII in Alberta, Canada","year":2023,"lang":"en","type":"article","venue":"European Journal of Clinical Microbiology & Infectious Diseases","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":false,"ca_institutions":"Public Health Agency of Canada; Provincial Laboratory of Public Health; University of Alberta","funders":"Ministry of Economic Development and Trade, Government of Alberta; Government of Alberta","keywords":"Multilocus sequence typing; Serotype; Biology; Clindamycin; Microbiology; Antibiotic resistance; Virology; Erythromycin; Typing; Penicillin; Tetracycline; Streptococcus agalactiae; Molecular epidemiology; Streptococcus; Genotype; Antibiotics; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004689491,0.0001489473,0.0005854691,0.0002409008,0.00004757672,0.00000753501,0.0001159235,0.00004848892,0.0001531532],"category_scores_gemma":[0.0009079869,0.0001233729,0.0002484719,0.0002881507,0.0001258487,0.00008121839,0.00007959138,0.0003618004,0.00006191842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007113898,"about_ca_system_score_gemma":0.0006838138,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.007853666,"about_ca_topic_score_gemma":0.02866247,"domain_scores_codex":[0.9977068,0.0005179816,0.001314635,0.0001841179,0.00006178508,0.0002146888],"domain_scores_gemma":[0.9981383,0.0004800816,0.0008123187,0.0001526676,0.0002245052,0.0001921277],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000277221,0.0002488609,0.8383558,0.00007096558,0.0001880251,0.0004699371,0.00004559419,0.00005615376,0.1567031,0.000008771422,0.0006718893,0.002903576],"study_design_scores_gemma":[0.001864851,0.0007347098,0.9864497,0.0002327493,0.0001395234,0.0003077275,0.00002679208,0.000003885922,0.001830304,0.00002044821,0.008281471,0.0001078189],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975344,0.00004954743,0.0000153366,0.0004618469,0.001177156,0.0001849464,0.00007111824,0.00002105557,0.000484573],"genre_scores_gemma":[0.9983443,0.0003914424,0.000005234313,0.0005230826,0.0003550373,0.000001941968,0.00008935458,0.00002674143,0.0002628714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1548728,"threshold_uncertainty_score":0.9987531,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01783951345476538,"score_gpt":0.2907866713933026,"score_spread":0.2729471579385372,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}