{"id":"W4366823000","doi":"10.1186/s12903-023-02917-z","title":"Pre-treatment oral microbiome analysis and salivary Stephan curve kinetics in white spot lesion development in orthodontic patients wearing fixed appliances. A pilot study","year":2023,"lang":"en","type":"article","venue":"BMC Oral Health","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"University of Alberta; American Association of Orthodontists Foundation","keywords":"Saliva; Oral Microbiome; Medicine; Microbiome; Dentistry; Streptococcus mitis; Capnocytophaga; Oral hygiene; Physiology; Internal medicine; Streptococcus; Bioinformatics; Oral cavity; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001053623,0.000293421,0.0007350491,0.0009496547,0.0001652686,0.00007183052,0.0002031157,0.00009964845,0.00008268499],"category_scores_gemma":[0.00002932398,0.0002684673,0.00005589345,0.002190828,0.00006798595,0.0001120665,0.0002852785,0.0002441298,0.0001484311],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000558781,"about_ca_system_score_gemma":0.0002202121,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.007730015,"about_ca_topic_score_gemma":0.4519158,"domain_scores_codex":[0.9966861,0.0008186828,0.000788679,0.0007047239,0.0002201289,0.000781688],"domain_scores_gemma":[0.9992132,0.00009228222,0.0001570484,0.0003121211,0.00005212078,0.0001732441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004633081,0.001715148,0.9903963,0.0001861792,0.00009054576,0.00006872747,0.0007766939,0.00008083553,0.0005288529,8.781748e-7,0.00007955184,0.005613016],"study_design_scores_gemma":[0.003172684,0.001812785,0.9938867,0.00009463416,0.00002858087,0.000002806355,0.00026552,0.0001467928,0.0001378633,0.000002887773,0.0002093207,0.0002394097],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977491,0.0002490002,0.00008173689,0.0000222146,0.0001733556,0.001568932,0.00008037795,0.00006352415,0.00001175198],"genre_scores_gemma":[0.9961123,0.0001034468,0.0020719,0.00003257852,0.00001741404,0.0001161293,0.0004609113,0.00002808746,0.001057269],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4441858,"threshold_uncertainty_score":0.9999768,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1136179703529099,"score_gpt":0.3883685246718171,"score_spread":0.2747505543189072,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}