{"id":"W4366823820","doi":"10.21203/rs.3.rs-2833611/v1","title":"Molecular evidence about ancestral origin, colonization patterns, and phylogenetic diversity of Coffea arabica, with insights in Latin America","year":2023,"lang":"en","type":"preprint","venue":"Research Square","topic":"Coffee research and impacts","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Fondation Pour La Conservation Du Saumon Atlantique","keywords":"Coffea arabica; Genetic diversity; Biology; Evolutionary biology; Phylogenetic tree; Species complex; DNA barcoding; Genetics; Botany; Demography; Population; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003767255,0.0003263387,0.0002181337,0.002126357,0.000575979,0.0008803126,0.0002108043,0.0002683349,0.001574747],"category_scores_gemma":[0.0009435415,0.0001053614,0.000304004,0.001952102,0.0004447096,0.0003223836,0.0003800937,0.0002087726,0.0001697702],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004121326,"about_ca_system_score_gemma":0.0003008191,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008618016,"about_ca_topic_score_gemma":0.0108121,"domain_scores_codex":[0.9998248,0.00003486216,0.00001442486,0.00008002121,0.00001822445,0.00002763627],"domain_scores_gemma":[0.9996231,0.0001033775,0.0001289369,0.0000321424,0.00006734231,0.00004510146],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009608805,0.00009122585,0.7459641,0.0004648365,0.0002555949,0.001351053,0.00584112,0.001504483,0.173085,0.001052073,0.0004602584,0.06896942],"study_design_scores_gemma":[0.00001248435,0.0000620939,0.9826525,0.0001112258,0.0001258978,0.0007279365,0.00289726,0.002545034,0.002808062,0.0004351701,0.007601319,0.00002094827],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962663,0.001042251,0.0007766854,0.00007744498,0.000005554315,0.000010986,0.000443124,0.00001653929,0.001361052],"genre_scores_gemma":[0.9969425,0.0004504519,0.001547889,0.00003322718,0.00000740973,0.00001268332,0.0007447363,0.000008835598,0.0002523355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008618016,"threshold_uncertainty_score":0.01713574,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1459676213265867,"score_gpt":0.4134590528207583,"score_spread":0.2674914314941716,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}