{"id":"W4366998747","doi":"10.1093/dnares/dsad006","title":"Telomere-to-telomere genome assembly of matsutake (<i>Tricholoma matsutake</i>)","year":2023,"lang":"en","type":"article","venue":"DNA Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Biology; Telomere; Genome; Intergenic region; Genetics; Gene; Genomics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001176558,0.000194241,0.0002774236,0.0003723516,0.0001989268,0.00003969469,0.0005916846,0.0001677708,0.00005223414],"category_scores_gemma":[0.0002638445,0.0001855548,0.000123156,0.00117254,0.0001650375,8.686739e-7,0.000782449,0.0001894295,0.0004608334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002488848,"about_ca_system_score_gemma":0.0001236173,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004922557,"about_ca_topic_score_gemma":0.00002597834,"domain_scores_codex":[0.9976129,0.0001558614,0.0003373382,0.0005690412,0.0005317646,0.0007930791],"domain_scores_gemma":[0.9985756,0.00007709709,0.00005810235,0.0006908567,0.0003895254,0.0002088056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000797402,0.00005238106,0.002166975,0.00005295315,0.00009572446,0.00001500447,0.000180478,0.00005908744,0.9875935,0.0002331844,0.006970194,0.002500732],"study_design_scores_gemma":[0.0007251126,0.0009980021,0.1639567,0.00002253297,0.00001627388,0.00001687221,0.0008570716,0.00003344272,0.5910086,0.0004908773,0.2414243,0.0004501895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915543,0.0009005949,0.00001542429,0.0005542316,0.0001239202,0.000429101,0.0002004078,0.00001144357,0.006210555],"genre_scores_gemma":[0.9953199,0.0007492014,0.0003747151,0.00009921867,0.0002532581,0.00009470661,0.0000685831,0.0000533145,0.002987121],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3965849,"threshold_uncertainty_score":0.7566704,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06114990520486994,"score_gpt":0.3529971449799735,"score_spread":0.2918472397751036,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}