{"id":"W4367043334","doi":"10.1016/j.cmi.2023.04.025","title":"Molecular characterization of Candida auris outbreak isolates in Qatar from patients with COVID-19 reveals the emergence of isolates resistant to three classes of antifungal drugs","year":2023,"lang":"en","type":"article","venue":"Clinical Microbiology and Infection","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Simon Fraser University; Sidra Medicine; McMaster University; Hamad Medical Corporation","keywords":"Candida auris; Fluconazole; Biology; Outbreak; Echinocandin; Drug resistance; Pandemic; Microbiology; Virology; Amphotericin B; Multiple drug resistance; Medicine; Coronavirus disease 2019 (COVID-19); Antifungal; Disease; Internal medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000597314,0.000104642,0.0004498778,0.000091221,0.00004284453,0.000002186384,0.00005662827,0.0001749046,0.00004193642],"category_scores_gemma":[0.0009289532,0.0000683265,0.00007203621,0.0003655044,0.0003314565,0.00004806431,0.00005106309,0.0001537109,0.000002655255],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001506725,"about_ca_system_score_gemma":0.0000894389,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006028917,"about_ca_topic_score_gemma":0.0007385002,"domain_scores_codex":[0.9986867,0.0001560373,0.0007109636,0.0002740334,0.00003997358,0.0001323153],"domain_scores_gemma":[0.9987914,0.0004464637,0.000298331,0.0002303032,0.0001720848,0.00006143493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001166672,0.0001051025,0.5776162,0.00008167999,0.0000383804,4.412907e-7,0.0001207149,0.000002545668,0.4206096,0.00001627692,0.00005690824,0.0001854801],"study_design_scores_gemma":[0.0008243172,0.001066612,0.9776324,0.0001594175,0.00006376767,4.205204e-7,0.00006387787,0.00002010731,0.01984992,0.0001202545,0.0001334967,0.00006538785],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985427,0.00006661249,0.0002694789,0.0003524516,0.0001136595,0.0004148652,0.0002128463,0.0000130537,0.00001432783],"genre_scores_gemma":[0.99914,0.0003073797,0.00003509303,0.0002257958,0.00001627893,0.000006170239,0.0002490868,0.000007030281,0.0000131262],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4007597,"threshold_uncertainty_score":0.2786274,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02083224767065507,"score_gpt":0.3165588543285498,"score_spread":0.2957266066578947,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}