{"id":"W4367048133","doi":"10.1093/nar/gkad276","title":"PlasMapper 3.0—a web server for generating, editing, annotating and visualizing publication quality plasmid maps","year":2023,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Genome Alberta; Genome Canada","keywords":"Plasmid; Upload; Biology; Zoom; Computer science; Cloning (programming); Genetics; Web server; Computational biology; Database; World Wide Web; Gene; The Internet; Programming language","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003306218,0.002251361,0.002291088,0.005368272,0.001374718,0.005004542,0.005139523,0.00161612,0.1165874],"category_scores_gemma":[0.005997589,0.00251375,0.001840769,0.005070095,0.0004369067,0.004655751,0.003698164,0.003445966,0.1683647],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001035813,"about_ca_system_score_gemma":0.002203282,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002578629,"about_ca_topic_score_gemma":0.001948056,"domain_scores_codex":[0.9983805,0.0002284982,0.0001601438,0.000248443,0.0008041625,0.0001781583],"domain_scores_gemma":[0.9965457,0.0007100817,0.0003626588,0.0008140237,0.001206281,0.0003612122],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008014878,0.00009315966,0.0007330993,0.001572867,0.0001431801,0.0003143713,0.0001748894,0.0007733689,0.03266395,0.002038814,0.8696249,0.09106585],"study_design_scores_gemma":[0.0003393275,0.0001067856,0.003678533,0.0003254696,0.0001072044,0.0008508722,0.0001152281,0.01045749,0.05586149,0.006742649,0.9211401,0.0002749009],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003063582,0.0009176808,0.1884148,0.0005730698,0.0004834929,0.000587674,0.1799209,0.6097155,0.01632336],"genre_scores_gemma":[0.01334731,0.001756869,0.2408136,0.0006245826,0.0002170041,0.001934044,0.5609273,0.1461106,0.03426869],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1165874,"threshold_uncertainty_score":0.3900238,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08267406161628908,"score_gpt":0.3888330762452489,"score_spread":0.3061590146289598,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}