{"id":"W4367048220","doi":"10.1128/mra.00110-23","title":"Hybrid Genome Assemblies of 245 Avian and Broiler Barn Environment-Associated Escherichia coli Strains Isolated from Saskatchewan Broiler Farms","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Innovation Saskatchewan; Chicken Farmers of Saskatchewan; Ministry of Agriculture - Saskatchewan","keywords":"Broiler; Barn; Escherichia coli; Biology; Veterinary medicine; Poultry farming; Genome; Animal science; Genetics; Geography; Medicine; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006603058,0.000576189,0.0004833826,0.001470185,0.000857236,0.0007955412,0.0004515217,0.0005929306,0.002932896],"category_scores_gemma":[0.000963641,0.0004675711,0.0007442222,0.002272985,0.0003023807,0.0002994236,0.0007565442,0.0006229244,0.0009584598],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001064469,"about_ca_system_score_gemma":0.001318959,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04337537,"about_ca_topic_score_gemma":0.1498169,"domain_scores_codex":[0.9996645,0.00003965427,0.00002553018,0.0001523408,0.00006070885,0.00005727613],"domain_scores_gemma":[0.9993626,0.0002037486,0.0000799554,0.00008232833,0.0001728907,0.00009843427],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005453947,0.0003311033,0.160589,0.001173645,0.002229867,0.001450996,0.004431472,0.01924695,0.7478564,0.00155043,0.008689203,0.04699698],"study_design_scores_gemma":[0.0002839506,0.0006349329,0.8772305,0.0002542052,0.001236822,0.0008612549,0.00422791,0.02383989,0.04750095,0.0009583279,0.04277622,0.0001950241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9200548,0.0003001078,0.003599869,0.00006470134,0.00003075279,0.00009471877,0.07333805,0.0003475639,0.002169431],"genre_scores_gemma":[0.6794265,0.0003457708,0.02306771,0.0002022173,0.00001061906,0.0002511705,0.2927611,0.0004240274,0.003510863],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9566246,"threshold_uncertainty_score":0.08624578,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01141373753510929,"score_gpt":0.231015554036921,"score_spread":0.2196018165018117,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}