{"id":"W4367048220","doi":"10.1128/mra.00110-23","title":"Hybrid Genome Assemblies of 245 Avian and Broiler Barn Environment-Associated Escherichia coli Strains Isolated from Saskatchewan Broiler Farms","year":2023,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Innovation Saskatchewan; Chicken Farmers of Saskatchewan; Ministry of Agriculture - Saskatchewan","keywords":"Broiler; Barn; Escherichia coli; Biology; Veterinary medicine; Poultry farming; Genome; Animal science; Genetics; Geography; Medicine; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003900043,0.0003866996,0.0004879065,0.0001220999,0.0002385639,0.00003446489,0.0004093162,0.0003011732,0.00009297176],"category_scores_gemma":[0.0001040472,0.0003787962,0.0001203267,0.0002296103,0.0005562973,0.000009324546,0.000772411,0.0002706666,0.00006569699],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000584757,"about_ca_system_score_gemma":0.00009300011,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001704286,"about_ca_topic_score_gemma":0.0001343002,"domain_scores_codex":[0.9975023,0.0003012655,0.0004730157,0.0007858221,0.0001601244,0.0007774795],"domain_scores_gemma":[0.9989959,0.0000477528,0.0002430154,0.0004831892,0.00009367897,0.0001364637],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001382798,0.000148621,0.02301695,0.00001968496,0.0007856252,0.00001271236,0.0005826544,0.00004325527,0.9707919,8.100775e-7,0.004209047,0.0002504571],"study_design_scores_gemma":[0.007494556,0.003192548,0.1794391,0.0001385511,0.0002957635,0.00002138801,0.00782166,0.000325733,0.1023108,0.0001087189,0.6967246,0.0021266],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937575,0.00112018,0.0000765877,0.0001758778,0.00006490642,0.0004110066,0.004012684,0.00005043374,0.0003308126],"genre_scores_gemma":[0.981362,0.0007871403,0.000153784,0.0004128255,0.00009018044,0.00006222185,0.01307078,0.00005899116,0.004002028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8684811,"threshold_uncertainty_score":0.9998664,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01141373753510929,"score_gpt":0.231015554036921,"score_spread":0.2196018165018117,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}