{"id":"W4367172901","doi":"10.1002/fft2.234","title":"Genome‐wide analysis, metabolomics, and transcriptomics reveal the molecular basis of <i>ZlRc</i> overexpression in promoting phenolic compound accumulation in rice seeds","year":2023,"lang":"en","type":"article","venue":"Food Frontiers","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agricultural Science and Technology Innovation Program; Chinese Academy of Agricultural Sciences","keywords":"Chalcone synthase; Chalcone isomerase; Flavonoid biosynthesis; Flavonoid; Biochemistry; Luteolin; Biology; Flavanone; Transcriptome; Phenylpropanoid; Biosynthesis; Enzyme; Gene; Botany; Chemistry; Antioxidant; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005311292,0.0001698714,0.0003602876,0.0004178401,0.00005304076,0.00002273518,0.0002466833,0.0001920232,0.0000019496],"category_scores_gemma":[0.00008968069,0.000146545,0.0001505828,0.00116003,0.00006170223,0.00001191257,0.0001098205,0.0001696132,6.085761e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002416496,"about_ca_system_score_gemma":0.00003536378,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007613873,"about_ca_topic_score_gemma":0.0001233666,"domain_scores_codex":[0.9985259,0.0002236378,0.0004132209,0.0003896853,0.0001842796,0.0002632395],"domain_scores_gemma":[0.9993634,0.00002602389,0.0001768892,0.0003398093,0.00003688565,0.00005697312],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008526933,0.00003349782,0.04417725,0.00002602662,0.0003616309,0.000002610863,0.0004326527,0.006352489,0.9478508,0.000005609922,0.0005017003,0.0001704163],"study_design_scores_gemma":[0.001833472,0.0001370452,0.1885971,0.00007411337,0.000577511,0.000003342005,0.001316544,0.02472675,0.7788264,0.0002631156,0.003148596,0.0004961155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948356,0.001291099,0.003211688,0.0002177361,0.00004023623,0.000228812,0.00007215171,0.00001066683,0.00009201241],"genre_scores_gemma":[0.9978942,0.0003860597,0.001098411,0.0001123786,0.00001947798,0.00001721436,0.0004014811,0.000018581,0.00005224716],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1690245,"threshold_uncertainty_score":0.5975934,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358688590322314,"score_gpt":0.2466181355595264,"score_spread":0.2330312496563033,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}