{"id":"W4367173864","doi":"10.1128/mbio.00636-23","title":"Genomic Analyses of a Fungemia Outbreak Caused by Lodderomyces elongisporus in a Neonatal Intensive Care Unit in Delhi, India","year":2023,"lang":"en","type":"article","venue":"mBio","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"International Centre for Genetic Engineering and Biotechnology; University Grants Commission; McMaster University; University of Delhi; Canadian Institute for Advanced Research","keywords":"Outbreak; Biology; Neonatal intensive care unit; Multilocus sequence typing; Fungemia; Microbiology; Genotyping; Pathogen; Fluconazole; Medicine; Genotype; Virology; Genetics; Pediatrics; Antifungal; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001356062,0.0002734316,0.0002562868,0.001233538,0.0007778369,0.0008106859,0.000409313,0.0004640575,0.0006568553],"category_scores_gemma":[0.0005074392,0.0002085086,0.0004025046,0.001353145,0.0004173685,0.0001988956,0.0006339478,0.0006565227,0.0001724151],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005175995,"about_ca_system_score_gemma":0.0005687,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01633934,"about_ca_topic_score_gemma":0.01416047,"domain_scores_codex":[0.9996843,0.00003559035,0.00004623782,0.00007441005,0.00007694403,0.00008241438],"domain_scores_gemma":[0.999552,0.0001048547,0.0001041171,0.00002329258,0.00008659214,0.00012915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005346108,0.0003949942,0.6047055,0.000361475,0.0001254349,0.1589204,0.008741142,0.0004999007,0.2114118,0.0003840478,0.000830818,0.01308995],"study_design_scores_gemma":[0.00001436335,0.0003508378,0.9371746,0.00006548174,0.0001917597,0.0337446,0.01293757,0.0003335655,0.01256299,0.00009154306,0.002498813,0.00003389967],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973605,0.0001583539,0.0002892422,0.0001737546,0.00001802327,0.0000442055,0.0008096868,0.00001234343,0.001133723],"genre_scores_gemma":[0.9982693,0.0002418226,0.0003686654,0.0001037153,0.00001117516,0.000007544624,0.0006994473,0.000003906108,0.0002943381],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01633934,"threshold_uncertainty_score":0.03248847,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04473762072008631,"score_gpt":0.3404910791360648,"score_spread":0.2957534584159785,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}