{"id":"W4367184219","doi":"10.1101/2023.04.25.538266","title":"Complete genome sequences of the species type strains <i>Sinorhizobium garamanticum</i> LMG 24692 <sup>T</sup> and <i>Sinorhizobium numidicum</i> LMG 27395 <sup>T</sup> and CIP 109850 <sup>T</sup>","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"HORIZON EUROPE Marie Sklodowska-Curie Actions; Natural Sciences and Engineering Research Council of Canada; European Commission","keywords":"Sinorhizobium; Sinorhizobium meliloti; Rhizobia; Biology; Genome; Phylogenetic tree; Genetics; Type species; Genus; Symbiosis; Gene; Botany; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003362003,0.001177477,0.0007869877,0.001458455,0.0005464944,0.0004953388,0.0005974512,0.00059665,0.003569371],"category_scores_gemma":[0.0007792584,0.0003397838,0.0007425235,0.003687962,0.0002213288,0.0003345314,0.0004237589,0.0008916202,0.002399127],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005139558,"about_ca_system_score_gemma":0.001459914,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008469852,"about_ca_topic_score_gemma":0.009874138,"domain_scores_codex":[0.9997857,0.00002459815,0.00002853799,0.00005719873,0.00006426894,0.00003974438],"domain_scores_gemma":[0.9994251,0.00009626878,0.0001702943,0.00007881807,0.0001316136,0.00009798578],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001201436,0.000125375,0.004272348,0.0008948967,0.00005768734,0.0003161655,0.0003969403,0.0004806625,0.9744777,0.0004815187,0.003243645,0.01405159],"study_design_scores_gemma":[0.0005702069,0.001457653,0.4094862,0.000525646,0.001060195,0.002591602,0.001317868,0.004189867,0.3520016,0.001682186,0.2248937,0.0002232134],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5375946,0.002475446,0.01394389,0.00037942,0.0002099741,0.0004471402,0.4366364,0.001023371,0.007289847],"genre_scores_gemma":[0.1400073,0.001333202,0.02581307,0.0001148149,0.00004369909,0.0002843749,0.8287082,0.0002551194,0.003440265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008469852,"threshold_uncertainty_score":0.01684111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02657605854864909,"score_gpt":0.2040472460037463,"score_spread":0.1774711874550972,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}