{"id":"W4367302931","doi":"10.1101/2023.04.24.538116","title":"Assessment of Total Oocyte Transcripts Representation through Single Ooplasm Biopsy in Bovine with High Reliability","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"Oocyte; Biology; Computational biology; Genome; Epigenetics; Gene; Annotation; Normalization (sociology); Ensembl; Transcriptome; Genetics; Genomics; Gene expression; Embryo","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001346234,0.0002641504,0.0004001883,0.0009705062,0.0004492304,0.0006652552,0.0003292067,0.0005015482,0.000849614],"category_scores_gemma":[0.001855721,0.0003144095,0.000219616,0.0008491122,0.0004542503,0.0003268331,0.0003732067,0.000253904,0.0004173657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003042209,"about_ca_system_score_gemma":0.0002840163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002363876,"about_ca_topic_score_gemma":0.006113213,"domain_scores_codex":[0.9987262,0.0001504114,0.00008930035,0.0004953468,0.0004562189,0.00008255728],"domain_scores_gemma":[0.9987822,0.000284151,0.0002066107,0.0001341723,0.0005493286,0.00004354048],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002590335,0.00001811239,0.03861679,0.0002284131,0.00005197162,0.00009900298,0.0003914583,0.0003931482,0.9385876,0.0001411534,0.0001425217,0.02107092],"study_design_scores_gemma":[0.00002059376,0.0005691082,0.5398514,0.0001069348,0.0004120596,0.001648316,0.0006893441,0.01306866,0.4322531,0.0005124619,0.01079034,0.00007761754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8839916,0.007563942,0.1029187,0.0001151916,0.00008488389,0.00009868439,0.002338811,0.0004722266,0.002415934],"genre_scores_gemma":[0.9310804,0.001555989,0.06340186,0.0001539044,0.00004332602,0.0001184161,0.002244523,0.0001834131,0.001218189],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002363876,"threshold_uncertainty_score":0.007119656,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02185316567262561,"score_gpt":0.2652531490543711,"score_spread":0.2433999833817455,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}