{"id":"W4367310455","doi":"10.1016/j.ygeno.2023.110633","title":"Chromatin accessibility in gill tissue identifies candidate genes and loci associated with aquaculture relevant traits in tilapia","year":2023,"lang":"en","type":"article","venue":"Genomics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; UK Research and Innovation","keywords":"Biology; Nile tilapia; Tilapia; Oreochromis; Aquaculture; Euryhaline; Gene; Genetics; Candidate gene; Genetic variation; Single-nucleotide polymorphism; Genotype; Fishery; Salinity; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002313298,0.0001588043,0.0001851709,0.00005388224,0.00004999811,0.00003226176,0.0001566291,0.0001756485,0.00000991653],"category_scores_gemma":[0.00005750603,0.0001385268,0.0000190785,0.0001617602,0.00008997632,0.000005432898,0.00009953339,0.0001051772,0.000006393697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003141904,"about_ca_system_score_gemma":0.00007459983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007842101,"about_ca_topic_score_gemma":0.004382327,"domain_scores_codex":[0.9989527,0.0000655767,0.0002355945,0.0003869915,0.00008414713,0.0002749783],"domain_scores_gemma":[0.9996482,0.00001690953,0.00007422324,0.0001761236,0.00002912619,0.00005542416],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002129883,0.0001436828,0.07055853,0.000118406,0.0001001166,0.0000222317,0.003614729,0.002592402,0.9065304,0.0001828037,0.001333522,0.01459021],"study_design_scores_gemma":[0.0007866428,0.0001466264,0.9594483,0.00002785263,0.0000121177,0.000005563799,0.0003266217,0.00007106164,0.03636399,0.001009206,0.001573797,0.0002282146],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983979,0.0008382323,0.00008237758,0.00009047607,0.00005207883,0.0002510152,0.00007260691,0.00001705462,0.0001982152],"genre_scores_gemma":[0.9974235,0.0002286327,0.001142897,0.00005753576,0.00004693917,0.00002249428,0.0002453587,0.0000208224,0.0008118566],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8888898,"threshold_uncertainty_score":0.564896,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0104754694275356,"score_gpt":0.2466962283307532,"score_spread":0.2362207589032176,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}