{"id":"W4367310455","doi":"10.1016/j.ygeno.2023.110633","title":"Chromatin accessibility in gill tissue identifies candidate genes and loci associated with aquaculture relevant traits in tilapia","year":2023,"lang":"en","type":"article","venue":"Genomics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; UK Research and Innovation","keywords":"Biology; Nile tilapia; Tilapia; Oreochromis; Aquaculture; Euryhaline; Gene; Genetics; Candidate gene; Genetic variation; Single-nucleotide polymorphism; Genotype; Fishery; Salinity; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006872157,0.00009726712,0.0001559947,0.0003113989,0.000166407,0.0001762383,0.00007474815,0.0001062548,0.001275807],"category_scores_gemma":[0.00009687723,0.0001019243,0.0001736264,0.0002301823,0.0001484343,0.00006151095,0.0002155247,0.0001722188,0.0001950687],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000147045,"about_ca_system_score_gemma":0.0001060423,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001490715,"about_ca_topic_score_gemma":0.003377282,"domain_scores_codex":[0.9999274,0.00000390994,0.000003927232,0.00003805146,0.00001272269,0.00001399352],"domain_scores_gemma":[0.9999313,0.00001470991,0.00002548129,0.000005321476,0.000007652242,0.0000155009],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001132862,0.00001094477,0.03270601,0.0000396694,0.00001777992,0.00008889868,0.0001102062,0.0001105997,0.963991,0.00005828506,0.0000555368,0.002697684],"study_design_scores_gemma":[0.00001462389,0.00008486456,0.9439929,0.000008089848,0.00004346752,0.0002817838,0.0002119186,0.001219206,0.05277202,0.0001468207,0.001213577,0.00001084131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998478,0.00008732422,0.0005263654,0.00001134216,0.000002378291,0.000003211803,0.0006312304,0.00001533603,0.0002448001],"genre_scores_gemma":[0.9976379,0.00004718101,0.0004840058,0.00002641917,0.000002045263,0.0000074792,0.0009836935,0.000008229977,0.0008031234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001490715,"threshold_uncertainty_score":0.004267991,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0104754694275356,"score_gpt":0.2466962283307532,"score_spread":0.2362207589032176,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}