{"id":"W4367599261","doi":"10.1101/gr.277628.122","title":"CRISPR-Cas9-based repeat depletion for high-throughput genotyping of complex plant genomes","year":2023,"lang":"en","type":"article","venue":"Genome Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Saskatchewan Research Council (Canada); University of Saskatchewan","funders":"European Commission","keywords":"Biology; Genotyping; Genetics; Genome; CRISPR; Genomics; DNA sequencing; Computational biology; Cas9; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006902977,0.0004283207,0.0006252505,0.0004419599,0.0003140763,0.0005996205,0.0006412768,0.0004823784,0.001235629],"category_scores_gemma":[0.0005040228,0.0003833952,0.0005886593,0.0003276483,0.0003120078,0.0003085307,0.0005698671,0.001020752,0.0007393693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00053613,"about_ca_system_score_gemma":0.0003752878,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008123202,"about_ca_topic_score_gemma":0.001928976,"domain_scores_codex":[0.9992724,0.0001323956,0.00006928189,0.0002037967,0.0002680367,0.00005400132],"domain_scores_gemma":[0.9996619,0.00009611435,0.00006818772,0.00008952325,0.00003896559,0.00004525444],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005129204,0.00001873573,0.0002164123,0.00008860687,0.00002401448,0.00003362483,0.00002257613,0.0008093841,0.9885067,0.0002940522,0.0002726079,0.009662034],"study_design_scores_gemma":[0.0000196944,0.00009546629,0.002428603,0.00001021033,0.00003040562,0.0002288417,0.00001118863,0.01243715,0.9769222,0.0003350679,0.007448297,0.00003283783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.4133191,0.002430537,0.5686999,0.0003164617,0.0001344331,0.0005384149,0.003936587,0.00664919,0.003975393],"genre_scores_gemma":[0.6758105,0.001415623,0.3120281,0.000261919,0.00003779783,0.000551259,0.004353504,0.0006020221,0.004939418],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.001235629,"threshold_uncertainty_score":0.004133582,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.193694194509419,"score_gpt":0.3517450806205367,"score_spread":0.1580508861111177,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}