{"id":"W4367668077","doi":"10.1093/jac/dkad067","title":"Genomic investigation of the most common <i>Streptococcus pneumoniae</i> serotypes causing invasive infections in Canada: the SAVE study, 2011–2020","year":2023,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Sinai Hospital; Queen Elizabeth II Health Sciences Centre; Government of New Brunswick; Public Health Ontario; Manitoba Health; University of Toronto; Saskatchewan Health; Saskatchewan Health Authority; University of Manitoba; Institut National de Santé Publique du Québec; Canada Research Chairs; University of Prince Edward Island; Public Health Agency of Canada","funders":"","keywords":"Streptococcus pneumoniae; Serotype; Microbiology; Biology; Pneumococcal infections; Virology; Medicine; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000674587,0.0005505494,0.0005033164,0.002136378,0.002326684,0.001440328,0.0008748078,0.0004731263,0.001639576],"category_scores_gemma":[0.001588493,0.0003342314,0.0006555361,0.005067513,0.0006960038,0.000300222,0.001115631,0.0006805164,0.0002984529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02274073,"about_ca_system_score_gemma":0.04571478,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9924403,"about_ca_topic_score_gemma":0.9956564,"domain_scores_codex":[0.9992156,0.00002423501,0.00002935632,0.0001242555,0.0003347599,0.0002718569],"domain_scores_gemma":[0.9977872,0.00005461376,0.0002566456,0.00005394703,0.001353144,0.0004943729],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000247052,0.00003078181,0.9824541,0.0001523153,0.0001021283,0.0001742274,0.0009235358,0.000356183,0.001359614,0.0001892215,0.004239571,0.009771293],"study_design_scores_gemma":[0.000005501191,0.00003487579,0.9952508,0.00005663844,0.00003371071,0.00009659639,0.001105546,0.0001993599,0.000199253,0.00001813288,0.002990808,0.000008771332],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9488433,0.002014259,0.0004471986,0.000663757,0.00002873721,0.0001185383,0.044028,0.00004271822,0.003813426],"genre_scores_gemma":[0.9750059,0.001965244,0.0009434007,0.0005425066,0.00002328567,0.00007360417,0.01860136,0.00002288824,0.002821839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02274073,"threshold_uncertainty_score":0.1649963,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01371067559659627,"score_gpt":0.2451336874030054,"score_spread":0.2314230118064091,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}