{"id":"W4367834105","doi":"10.1186/s12863-023-01128-3","title":"HostSeq: a Canadian whole genome sequencing and clinical data resource","year":2023,"lang":"en","type":"article","venue":"BMC Genomic Data","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Women's College Hospital; Queen's University; Ottawa Hospital; University Health Network; BC Children's Hospital; University of British Columbia; St. Paul's Hospital; Alberta Children's Hospital; St. Michael's Hospital; Jewish General Hospital; Canada's Michael Smith Genome Sciences Centre; Sinai Health System; University of Waterloo; Lunenfeld-Tanenbaum Research Institute; University of Calgary; University of Ottawa; Simon Fraser University; McGill University; University of Toronto; Hospital for Sick Children","funders":"Southeastern Ontario Academic Medical Organization; Ministry of Colleges and Universities; Genome Alberta; University of Toronto; Génome Québec; Genome British Columbia; Innovation, Science and Economic Development Canada; Cumming School of Medicine, University of Calgary; Hotchkiss Brain Institute, University of Calgary; Public Health Agency of Canada; Canadian Institutes of Health Research; Genome Canada","keywords":"Data science; Data sharing; Resource (disambiguation); Mandate; Public health; Computer science; Medicine; Political science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002598413,0.0001619514,0.0003311927,0.0002884355,0.0001609023,0.0001007368,0.001757909,0.0001383979,0.0000228757],"category_scores_gemma":[0.00114513,0.0001545723,0.0000348631,0.0003951241,0.0001738326,0.0001825235,0.003069396,0.0003952246,0.001473743],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002379568,"about_ca_system_score_gemma":0.002911567,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.05083799,"about_ca_topic_score_gemma":0.1191634,"domain_scores_codex":[0.9975024,0.0001167368,0.0004094339,0.001035998,0.00028502,0.000650436],"domain_scores_gemma":[0.9948969,0.0002936838,0.00005561018,0.004437956,0.00003633247,0.0002795364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004890132,0.00009454146,0.6865175,0.000495264,0.0004436123,0.002050234,0.0007092941,0.000002020085,0.05979346,0.00006796172,0.2172212,0.03211583],"study_design_scores_gemma":[0.0009068892,0.00007589871,0.08161542,0.0000332312,0.00007155117,0.00008691013,0.0004549256,0.007389104,0.00002806862,0.00002324036,0.9091517,0.0001630212],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881427,0.001106828,0.0000586794,0.001307233,0.0001405669,0.0005863379,0.005363219,0.0001299827,0.003164497],"genre_scores_gemma":[0.8057771,0.0003376774,0.006508598,0.1402322,0.004491104,0.0000522997,0.038794,0.0004187609,0.003388241],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6919305,"threshold_uncertainty_score":0.9993037,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2802443180976014,"score_gpt":0.42271940752419,"score_spread":0.1424750894265886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}