{"id":"W4367834105","doi":"10.1186/s12863-023-01128-3","title":"HostSeq: a Canadian whole genome sequencing and clinical data resource","year":2023,"lang":"en","type":"article","venue":"BMC Genomic Data","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; Women's College Hospital; Queen's University; Ottawa Hospital; University Health Network; BC Children's Hospital; University of British Columbia; St. Paul's Hospital; Alberta Children's Hospital; St. Michael's Hospital; Jewish General Hospital; Canada's Michael Smith Genome Sciences Centre; Sinai Health System; University of Waterloo; Lunenfeld-Tanenbaum Research Institute; University of Calgary; University of Ottawa; Simon Fraser University; McGill University; University of Toronto; Hospital for Sick Children","funders":"Southeastern Ontario Academic Medical Organization; Ministry of Colleges and Universities; Genome Alberta; University of Toronto; Génome Québec; Genome British Columbia; Innovation, Science and Economic Development Canada; Cumming School of Medicine, University of Calgary; Hotchkiss Brain Institute, University of Calgary; Public Health Agency of Canada; Canadian Institutes of Health Research; Genome Canada","keywords":"Data science; Data sharing; Resource (disambiguation); Mandate; Public health; Computer science; Medicine; Political science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008976215,0.001597068,0.001437485,0.007870155,0.003690994,0.004333077,0.003775168,0.001351567,0.05606081],"category_scores_gemma":[0.02645074,0.001245035,0.001467391,0.01253304,0.0008525801,0.001621089,0.004988273,0.002118108,0.01304047],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01518486,"about_ca_system_score_gemma":0.07609469,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.8437999,"about_ca_topic_score_gemma":0.8902344,"domain_scores_codex":[0.9955921,0.0007214657,0.000403963,0.000906949,0.001743697,0.0006317637],"domain_scores_gemma":[0.9751391,0.004162952,0.001164827,0.002634921,0.01303478,0.003863459],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001093971,0.00004870327,0.01458838,0.001172392,0.0003162808,0.0002141724,0.0008190739,0.001266499,0.002146355,0.00639184,0.9160195,0.05592276],"study_design_scores_gemma":[0.0004836418,0.00005423299,0.03448262,0.0006912382,0.0001865959,0.0001332399,0.0005183322,0.002207299,0.001583582,0.004990648,0.9544731,0.0001956849],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.003412445,0.0006868468,0.0108269,0.002074654,0.0002376753,0.0006181482,0.9616827,0.004264407,0.01619626],"genre_scores_gemma":[0.01689957,0.001179555,0.04556479,0.001880819,0.0001464959,0.001337445,0.9205485,0.002342126,0.01010062],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.9848151,"threshold_uncertainty_score":0.31424,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2802443180976014,"score_gpt":0.42271940752419,"score_spread":0.1424750894265886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}