{"id":"W4367838407","doi":"10.1101/2023.05.02.539155","title":"Host-Microbiome Associations in Saliva Predict COVID-19 Severity","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Salivary Gland Disorders and Functions","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"National Institutes of Health; Dasman Diabetes Institute; L'Oreal USA","keywords":"Saliva; Microbiome; Immunology; Immune system; Pathogenesis; Biology; Oral Microbiome; Medicine; Bioinformatics; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008489906,0.0005375559,0.0008552976,0.0007717209,0.000234034,0.0001265158,0.000324493,0.0008715148,0.0002225382],"category_scores_gemma":[0.001667665,0.0005801971,0.0002833066,0.001337725,0.0001266948,0.0001166998,0.0004372573,0.001146712,0.0002756504],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001099496,"about_ca_system_score_gemma":0.002488152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001140576,"about_ca_topic_score_gemma":0.00008811404,"domain_scores_codex":[0.9968941,0.0001607902,0.0007391806,0.001077566,0.0004434441,0.0006849374],"domain_scores_gemma":[0.9972409,0.0002042967,0.0003461955,0.001252708,0.0003140056,0.0006418974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001375582,0.0008516694,0.9139475,0.001013346,0.000485399,0.0003985105,0.0000668435,0.0001075395,0.05589323,0.0003380366,0.0267599,5.093315e-7],"study_design_scores_gemma":[0.002032836,0.00008102352,0.9816108,0.0003081555,0.0002927835,8.016274e-8,0.00001735863,0.000289966,0.00141554,0.00001267196,0.01328407,0.0006547236],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9791853,0.001033564,0.00164664,0.006752595,0.003031047,0.002283743,0.003967786,0.002017174,0.00008209236],"genre_scores_gemma":[0.9950945,0.0004997866,0.001122773,0.00205458,0.0005863954,0.0003596796,0.00001827143,0.0001723875,0.00009162309],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06766333,"threshold_uncertainty_score":0.999665,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03250461649101671,"score_gpt":0.2682494828475887,"score_spread":0.235744866356572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}