{"id":"W4368357625","doi":"10.1093/nar/gkad330","title":"DEPICTER2: a comprehensive webserver for intrinsic disorder and disorder function prediction","year":2023,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Machine Learning in Bioinformatics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Science Foundation","keywords":"Biology; Function (biology); Computational biology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004842376,0.0001242685,0.0001158611,0.0001617303,0.0003184694,0.00006383145,0.0001521653,0.0001806391,0.00004082328],"category_scores_gemma":[0.000312536,0.0001153484,0.00005239855,0.0003148536,0.0001564749,0.00001243437,0.0003173882,0.0002561066,0.00005763204],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000167594,"about_ca_system_score_gemma":0.0000408598,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003146861,"about_ca_topic_score_gemma":0.00003806565,"domain_scores_codex":[0.998713,0.0001138987,0.000197218,0.0002949851,0.0002812114,0.0003996561],"domain_scores_gemma":[0.9992176,0.00007976651,0.00003895735,0.0003075526,0.0002695001,0.00008661777],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002229485,0.0002981749,0.5026522,0.001576924,0.0004839544,0.000005384758,0.001451551,0.002186886,0.08961876,0.002306733,0.1052358,0.2919541],"study_design_scores_gemma":[0.001626228,0.001310667,0.2818883,0.00002341741,0.00001562188,0.000006496004,0.0008373149,0.02678448,0.0005186806,0.0003434879,0.6864429,0.0002024433],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937884,0.000219581,0.004013759,0.0005522811,0.0001533036,0.0005792824,0.00004492229,0.00006869127,0.0005798391],"genre_scores_gemma":[0.9953364,0.0004909603,0.0006947817,0.0001256649,0.0003256959,0.0001637388,0.0006053765,0.00004503512,0.002212349],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.581207,"threshold_uncertainty_score":0.4703771,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03124702638670713,"score_gpt":0.3301333404549639,"score_spread":0.2988863140682568,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}