{"id":"W4368618126","doi":"10.1186/s12915-023-01563-9","title":"Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes","year":2023,"lang":"en","type":"article","venue":"BMC Biology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; McGill Genome Centre; Environment and Climate Change Canada; Université de Montréal","funders":"European Regional Development Fund; Fonds de recherche du Québec – Nature et technologies; Dalhousie University; Japan Society for the Promotion of Science; Natural Sciences and Engineering Research Council of Canada; Royal Society; Canadian Institutes of Health Research; Biotechnology and Biological Sciences Research Council; Gordon and Betty Moore Foundation; Grantová Agentura České Republiky; Sight Research UK; Directorate for Biological Sciences; Natural Environment Research Council","keywords":"Biology; Genome; Gene; Horizontal gene transfer; Evolutionary biology; Mobile genetic elements; Genetics; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003123578,0.000100611,0.000266917,0.00006768596,0.00002251293,0.000001091224,0.0002379469,0.0001452174,0.0000329236],"category_scores_gemma":[0.0001129596,0.00007555415,0.00009440084,0.0002148586,0.0002866625,0.000002273742,0.0004041526,0.000061846,0.000003085628],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004272635,"about_ca_system_score_gemma":0.00005313911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001269827,"about_ca_topic_score_gemma":0.0002375977,"domain_scores_codex":[0.9991373,0.0001440534,0.0002780423,0.0002109111,0.00006944974,0.0001602076],"domain_scores_gemma":[0.9993635,0.00005474436,0.0001458979,0.0003440661,0.00006917758,0.00002261966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003749379,0.00007291119,0.3005623,0.00005502738,0.00004257638,5.457299e-7,0.0001315447,0.0001956155,0.6942039,0.002835851,0.0001348226,0.001389932],"study_design_scores_gemma":[0.0005633809,0.0002135545,0.6494786,0.000008602777,0.00001928061,8.021546e-7,0.0001093102,0.0003622404,0.3452086,0.002123674,0.001825202,0.00008682573],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977197,0.001135646,0.0001237997,0.00008223127,0.00008573905,0.0001878474,0.0001207799,0.000004510019,0.0005397656],"genre_scores_gemma":[0.9950764,0.00413797,0.0004438542,0.00002266685,0.00004096869,0.000005555143,0.0001646976,0.00000512346,0.0001028013],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3489954,"threshold_uncertainty_score":0.3081009,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03246318522312385,"score_gpt":0.2522332290549367,"score_spread":0.2197700438318128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}