{"id":"W4372331783","doi":"10.1038/s41467-023-38301-2","title":"Hybrids of RNA viruses and viroid-like elements replicate in fungi","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Tobacco Research Unit; University of Toronto","funders":"University of British Columbia; Ministerio de Economía y Competitividad; Canadian Institutes of Health Research; European Commission","keywords":"Viroid; RNA; Ribozyme; Biology; Circular RNA; Genome; Genetics; Virology; Plant virus; Ligase ribozyme; RNA silencing; Computational biology; Gene; Virus; RNA interference","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001943542,0.00005343475,0.0000678651,0.0001137288,0.00006557198,0.000009783646,0.0003803276,0.0001076119,0.000005837665],"category_scores_gemma":[0.0001159736,0.0000527964,0.00002554005,0.0002441309,0.00006870501,0.000004457599,0.0003965528,0.0002871742,0.00001294089],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006917056,"about_ca_system_score_gemma":0.00002283163,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003043453,"about_ca_topic_score_gemma":0.0004576063,"domain_scores_codex":[0.9994891,0.00005884827,0.0001475074,0.0001280053,0.00006936352,0.000107209],"domain_scores_gemma":[0.9990474,0.00006057128,0.00003986388,0.0007675046,0.00005665284,0.00002800223],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002741438,0.00005331323,0.02255687,0.000006532258,0.00002581724,7.842617e-7,0.00002457822,0.000003129848,0.9637728,0.0003935846,0.01110913,0.002026045],"study_design_scores_gemma":[0.0005705286,0.0001269718,0.1442671,0.00004475782,0.00001541968,0.00001663339,0.0001848323,0.001185276,0.3191388,0.0001768882,0.5340523,0.000220524],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908144,0.004747301,0.000008452713,0.0005539188,0.00004777601,0.0001311994,0.00009256086,0.00001373252,0.003590657],"genre_scores_gemma":[0.9923131,0.006219972,0.0003859768,0.0001322963,0.00001469352,0.00003011774,0.0003365848,0.000007061598,0.0005601488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.644634,"threshold_uncertainty_score":0.2152975,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04124582975461619,"score_gpt":0.3738117270838622,"score_spread":0.332565897329246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}