{"id":"W4372331783","doi":"10.1038/s41467-023-38301-2","title":"Hybrids of RNA viruses and viroid-like elements replicate in fungi","year":2023,"lang":"en","type":"article","venue":"Nature Communications","topic":"Plant and Fungal Interactions Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Tobacco Research Unit; University of Toronto","funders":"University of British Columbia; Ministerio de Economía y Competitividad; Canadian Institutes of Health Research; European Commission","keywords":"Viroid; RNA; Ribozyme; Biology; Circular RNA; Genome; Genetics; Virology; Plant virus; Ligase ribozyme; RNA silencing; Computational biology; Gene; Virus; RNA interference","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001837274,0.0001597119,0.0001517267,0.0005331618,0.0003794459,0.0006911766,0.0001698101,0.0003058789,0.0008458977],"category_scores_gemma":[0.0003365459,0.0001642404,0.0002007919,0.0003007906,0.000271618,0.0002570804,0.0003777014,0.0002789151,0.0003210617],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003016974,"about_ca_system_score_gemma":0.0001455673,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000776721,"about_ca_topic_score_gemma":0.001044205,"domain_scores_codex":[0.9997717,0.00002915598,0.0000160064,0.00009554217,0.00005654201,0.00003124858],"domain_scores_gemma":[0.9996961,0.0001021173,0.00007678675,0.00002666429,0.000019375,0.00007894034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002448918,0.00002371247,0.007766795,0.00006602452,0.00002088868,0.0001872448,0.0001107846,0.000123411,0.9853815,0.0008568027,0.00003298958,0.005184954],"study_design_scores_gemma":[0.0000643947,0.0009039827,0.2592826,0.00005949599,0.0001545247,0.005895411,0.000729461,0.004150177,0.7124386,0.002519525,0.01375162,0.00005024878],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905544,0.002522916,0.003034173,0.0000266026,0.00001279127,0.00001709101,0.0002494967,0.00006495717,0.003517587],"genre_scores_gemma":[0.9962499,0.0003141598,0.002027254,0.00002574949,0.000005401244,0.000009815111,0.0004055802,0.000009917823,0.0009523703],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008458977,"threshold_uncertainty_score":0.00282985,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04124582975461619,"score_gpt":0.3738117270838622,"score_spread":0.332565897329246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}