{"id":"W4375824528","doi":"10.1007/978-1-0716-3151-5_21","title":"Isolation and Preparation of Extracellular Proteins from Lignocellulose-Degrading Fungi for Comparative Proteomic Studies Using Mass Spectrometry","year":2023,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Concordia University; Agriculture and Agri-Food Canada","funders":"","keywords":"Proteomics; Mass spectrometry; Biology; Metabolomics; Organism; Proteome; Biochemistry; Computational biology; Chemistry; Chromatography; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007304329,0.0001054525,0.0003100078,0.00007319785,0.00007751561,0.00001136745,0.00006640641,0.00009136071,0.00001619654],"category_scores_gemma":[0.0001497652,0.00005362563,0.00006963455,0.0005215656,0.0000757925,0.00004029326,0.00002784843,0.00005786906,9.451044e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002762966,"about_ca_system_score_gemma":0.000004488223,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000578604,"about_ca_topic_score_gemma":0.00002930502,"domain_scores_codex":[0.998539,0.0006734899,0.0003015219,0.0002863788,0.00005165814,0.0001479619],"domain_scores_gemma":[0.9992877,0.000430766,0.0001600999,0.00004381681,0.00005556897,0.00002210562],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005191396,0.00001490488,0.002639669,0.00001063601,0.0000621428,0.000001001098,0.0003927379,0.0001906624,0.9944247,0.0004708877,0.00000139814,0.001739351],"study_design_scores_gemma":[0.0001755586,0.000251605,0.002865948,0.00001663504,0.00003707185,5.402093e-7,0.001379236,0.04029211,0.9376708,0.01717342,0.00002390025,0.0001132024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7420384,0.0006310962,0.256716,0.00006975253,0.00003408207,0.0004656646,0.00001704261,0.00001765328,0.00001020152],"genre_scores_gemma":[0.5403153,0.00004176014,0.4594758,0.00001156825,0.00002307439,0.00004258072,0.0000634398,8.995057e-7,0.00002550533],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2027598,"threshold_uncertainty_score":0.218679,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.129201591734203,"score_gpt":0.4324474275300385,"score_spread":0.3032458357958355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}