{"id":"W4375954974","doi":"10.1093/nar/gkad370","title":"Attenuation of a DNA cruciform by a conserved regulator directs T3SS1 mediated virulence in <i>Vibrio parahaemolyticus</i>","year":2023,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Killam Trusts","keywords":"Biology; Virulence; Vibrio parahaemolyticus; Cruciform; Genetics; Gene; Regulation of gene expression; Vibrio; Promoter; Molecular biology; Gene expression; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001482542,0.000262515,0.0001409164,0.00008596564,0.0001116195,0.0001844376,0.000140713,0.0001719777,0.0006003146],"category_scores_gemma":[0.0001928405,0.00009043135,0.0001648977,0.00006013418,0.000211112,0.0001225276,0.0002449111,0.0003159223,0.0002363748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000311017,"about_ca_system_score_gemma":0.0002202136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006246182,"about_ca_topic_score_gemma":0.0007225792,"domain_scores_codex":[0.9998872,0.00002280568,0.000007849816,0.000027327,0.00003207742,0.00002266144],"domain_scores_gemma":[0.9998782,0.00002739308,0.00004391375,0.00001308877,0.00001359212,0.00002389599],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002659342,0.000007310156,0.0001224561,0.000009193042,6.828233e-7,0.00001766928,0.000007901232,0.00002691939,0.9994198,0.00006019278,0.000005434224,0.0002958275],"study_design_scores_gemma":[0.000004906174,0.0001471551,0.002582248,0.000003797508,0.000003964364,0.0001425894,0.00002738906,0.0008103082,0.9956033,0.00005392031,0.0006177856,0.000002772081],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954554,0.0003135679,0.003616374,0.00004753503,0.00001011785,0.00001340691,0.00006499623,0.00007123573,0.000407416],"genre_scores_gemma":[0.997523,0.00009123899,0.001414817,0.00001519964,0.000002826399,0.000008313375,0.0001580111,0.0000124538,0.0007739654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006246182,"threshold_uncertainty_score":0.002256572,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03996046562916928,"score_gpt":0.3367844100063751,"score_spread":0.2968239443772058,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}