{"id":"W4376133202","doi":"10.1038/s41586-023-05896-x","title":"A draft human pangenome reference","year":2023,"lang":"en","type":"article","venue":"Nature","topic":"Genetic Neurodegenerative Diseases","field":"Neuroscience","cited_by":1148,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; National Institutes of Health; National Human Genome Research Institute; Novo Nordisk Fonden; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Wellcome Trust","keywords":"Computational biology; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004240665,0.001735022,0.001674849,0.005681407,0.001557423,0.002278907,0.003217305,0.002236423,0.06722845],"category_scores_gemma":[0.01402614,0.001298546,0.001193254,0.00564939,0.0004270432,0.001667435,0.003091957,0.002115251,0.06084961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00110579,"about_ca_system_score_gemma":0.003769811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008126169,"about_ca_topic_score_gemma":0.00856403,"domain_scores_codex":[0.9978206,0.0005026027,0.0003081539,0.0006025909,0.0005865948,0.0001794729],"domain_scores_gemma":[0.993692,0.001368917,0.000377659,0.001612061,0.002575734,0.0003736074],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001496559,0.0001881363,0.004055507,0.004934246,0.0002220837,0.001035399,0.00092683,0.002522226,0.03330765,0.007578192,0.7643076,0.1794255],"study_design_scores_gemma":[0.0001417718,0.0001088014,0.004260056,0.0006187814,0.0001168602,0.0006032955,0.000142356,0.001064551,0.008061112,0.00446406,0.9803476,0.0000707756],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.008167017,0.005041328,0.120727,0.002198353,0.001616862,0.001122722,0.8105735,0.02907942,0.0214738],"genre_scores_gemma":[0.005646646,0.001021364,0.06875489,0.0005220137,0.0001345041,0.000817485,0.9131277,0.003802055,0.006173364],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.06722845,"threshold_uncertainty_score":0.2249016,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05439339111178432,"score_gpt":0.331449616159246,"score_spread":0.2770562250474616,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}