{"id":"W4376274094","doi":"10.1007/s13205-023-03607-x","title":"Genome mining of Pseudomonas spp. hints towards the production of under-pitched secondary metabolites","year":2023,"lang":"en","type":"article","venue":"3 Biotech","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Pseudomonas chlororaphis; Ectoine; Betaine; Trehalose; Pseudomonas fluorescens; Metabolome; Strain (injury); Biology; Microbiology; Osmoprotectant; Pseudomonas; Biochemistry; Rhamnolipid; Metabolomics; Chemistry; Food science; Pseudomonas aeruginosa; Bacteria; Metabolite; Genetics; Amino acid; Proline","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003423035,0.0001329721,0.0002027334,0.00008924984,0.00005061076,0.000007854247,0.0003042004,0.0003329764,0.0000309357],"category_scores_gemma":[0.000118329,0.00009786677,0.00009845732,0.0003571415,0.0002338635,0.000002246227,0.0002453988,0.0001114397,0.000008591481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005889419,"about_ca_system_score_gemma":0.00008840088,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003139174,"about_ca_topic_score_gemma":0.00001562659,"domain_scores_codex":[0.9990429,0.00004489539,0.0002852835,0.0002998192,0.0001182607,0.0002088935],"domain_scores_gemma":[0.9992129,0.000009326675,0.000158855,0.000495579,0.00009684376,0.0000265421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000350637,0.00002583561,0.00008835957,0.00003014918,0.00007391051,4.669949e-7,0.00004915869,0.00001495339,0.9924944,0.0001611554,0.0002181075,0.006808436],"study_design_scores_gemma":[0.0001448871,0.0001665688,0.0186125,0.000008738556,0.00002540451,0.000008860975,0.0001898566,0.000005546759,0.9592177,0.0002453141,0.02126713,0.0001074639],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.996519,0.0009037413,0.00004402744,0.001590983,0.0004048457,0.0001849473,0.0000394982,0.00002747133,0.0002855001],"genre_scores_gemma":[0.9973453,0.000999011,0.0007943419,0.00004715105,0.0001929309,0.000009712399,0.00008986388,0.00001897399,0.000502734],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03327668,"threshold_uncertainty_score":0.3990891,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01983041452020485,"score_gpt":0.2459071818604759,"score_spread":0.226076767340271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}