{"id":"W4376274094","doi":"10.1007/s13205-023-03607-x","title":"Genome mining of Pseudomonas spp. hints towards the production of under-pitched secondary metabolites","year":2023,"lang":"en","type":"article","venue":"3 Biotech","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Pseudomonas chlororaphis; Ectoine; Betaine; Trehalose; Pseudomonas fluorescens; Metabolome; Strain (injury); Biology; Microbiology; Osmoprotectant; Pseudomonas; Biochemistry; Rhamnolipid; Metabolomics; Chemistry; Food science; Pseudomonas aeruginosa; Bacteria; Metabolite; Genetics; Amino acid; Proline","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002125695,0.0006007734,0.0004780106,0.001000909,0.0003552565,0.001158867,0.0002546371,0.0006376691,0.001745051],"category_scores_gemma":[0.0006309902,0.0002251356,0.0006913765,0.001224279,0.0002836264,0.0004287454,0.0005025596,0.0006315419,0.001219394],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002328375,"about_ca_system_score_gemma":0.0004116744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001109364,"about_ca_topic_score_gemma":0.001992367,"domain_scores_codex":[0.9997885,0.0000193674,0.00001441291,0.00006583627,0.00007209161,0.00003981345],"domain_scores_gemma":[0.9995925,0.0001015757,0.0001107018,0.00004413191,0.00008089257,0.00007023694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002541595,0.0000795286,0.01126111,0.000245933,0.00003799114,0.0005571093,0.0001004158,0.0002166183,0.9712488,0.000138582,0.0003585885,0.01550121],"study_design_scores_gemma":[0.00004249301,0.0007846722,0.2660935,0.0001121696,0.0003176295,0.005407623,0.001173057,0.00358576,0.703928,0.001362725,0.01712028,0.00007213911],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9770724,0.002045017,0.007426184,0.0009054362,0.00007614484,0.00006888382,0.008620983,0.0004174524,0.003367516],"genre_scores_gemma":[0.9786873,0.001013671,0.009595233,0.0002530007,0.00002779714,0.00002573214,0.007956659,0.00006492831,0.002375695],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001745051,"threshold_uncertainty_score":0.005837739,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01983041452020485,"score_gpt":0.2459071818604759,"score_spread":0.226076767340271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}