{"id":"W4376603927","doi":"10.1101/2023.05.15.540745","title":"Surface exclusion of IncC conjugative plasmids and their relatives","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Plasmid; Biology; Genetics; Genome; Transposable element; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001406811,0.0003590863,0.0002436165,0.0004353238,0.0001587343,0.0002973602,0.0001484443,0.0001769588,0.0008116618],"category_scores_gemma":[0.0002542667,0.00008703813,0.0002118973,0.0002895145,0.0001642999,0.0001365806,0.0003163021,0.0004073643,0.0003066431],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002237122,"about_ca_system_score_gemma":0.0001775244,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007684536,"about_ca_topic_score_gemma":0.0004474929,"domain_scores_codex":[0.9997956,0.00002302476,0.00001300194,0.00003532095,0.00008853229,0.0000445673],"domain_scores_gemma":[0.9996705,0.00007580529,0.00008647943,0.00004844192,0.00006506927,0.00005373145],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004280362,0.00001674833,0.001149091,0.00001053291,0.000002822464,0.00008460387,0.00001774992,0.000021124,0.9973558,0.00006636285,0.00001269648,0.001219637],"study_design_scores_gemma":[0.000005546955,0.0002654776,0.02806012,0.000006002306,0.00001209648,0.001153893,0.00008735715,0.001035671,0.9679707,0.00009422465,0.001303651,0.000005220133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975119,0.0001890179,0.001512029,0.0000242746,0.000004639689,0.000008650128,0.0001267619,0.00002635086,0.0005964233],"genre_scores_gemma":[0.99635,0.00008400403,0.001065996,0.00001912846,0.000004258366,0.00001124053,0.000761448,0.0000139033,0.001689871],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008116618,"threshold_uncertainty_score":0.00271529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01548989634341393,"score_gpt":0.2332673033239035,"score_spread":0.2177774069804896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}