{"id":"W4376610600","doi":"10.1128/spectrum.01404-23","title":"Multiomics Reveals Symbionts, Pathogens, and Tissue-Specific Microbiome of Blacklegged Ticks (Ixodes scapularis) from a Lyme Disease Hot Spot in Southeastern Ontario, Canada","year":2023,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Queen's University; Government of Canada; Government of Ontario","keywords":"Ixodes scapularis; Biology; Borrelia; Borrelia burgdorferi; Lyme disease; Tick; Anaplasma phagocytophilum; Microbiology; Microbiome; Ixodidae; Anaplasma; Ixodes; Amblyomma americanum; Virology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001668717,0.0003250606,0.0003161118,0.001184575,0.001396889,0.0009289352,0.0002914356,0.0002754374,0.0008594786],"category_scores_gemma":[0.0002197243,0.0001820874,0.0002182163,0.001168555,0.0003560465,0.0001857606,0.0006079421,0.0002775278,0.0002130143],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003412304,"about_ca_system_score_gemma":0.004858835,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8120823,"about_ca_topic_score_gemma":0.9335082,"domain_scores_codex":[0.9997771,0.00001107939,0.000008074029,0.00005015758,0.00006370709,0.00008981072],"domain_scores_gemma":[0.9997967,0.000008004724,0.00003231453,0.000004797861,0.0001086845,0.00004953441],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003527481,0.00006794216,0.7887671,0.0002248068,0.0001659259,0.0005237209,0.003830915,0.0003810925,0.1843029,0.000201451,0.001652955,0.01952863],"study_design_scores_gemma":[0.000002636544,0.00002589347,0.9929072,0.00003079933,0.00004289607,0.0001072356,0.003066406,0.0003094774,0.001516523,0.00002696329,0.001956997,0.000006920151],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922694,0.0008796876,0.0003688621,0.0001623758,0.000009092249,0.0000228869,0.005146888,0.00001116044,0.001129595],"genre_scores_gemma":[0.9900329,0.001130177,0.00129108,0.0002083613,0.000007346973,0.00002164628,0.004764332,0.00001389331,0.002530303],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1879177,"threshold_uncertainty_score":0.3780488,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009106450210082684,"score_gpt":0.2028349729942739,"score_spread":0.1937285227841913,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}