{"id":"W4376617940","doi":"10.1101/2023.05.13.540557","title":"Extensive Copy Number Variation Explains Genome Size Variation in the Unicellular Zygnematophycean Alga, <i>Closterium peracerosum-strigosum-littorale</i> Complex","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; NODAI Genome Research Center, Tokyo University of Agriculture; Japan Society for the Promotion of Science","keywords":"Copy-number variation; Biology; Genome; Genome size; Gene; Genetics; Gene dosage; Transcriptome; Variation (astronomy); Genome evolution; Gene expression; Evolutionary biology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002002444,0.0002087226,0.0002516782,0.0008545581,0.0001646655,0.000324545,0.0002198668,0.0002225727,0.0005670126],"category_scores_gemma":[0.0004198448,0.0001727576,0.0002974515,0.0005087114,0.000180024,0.000158435,0.0002938888,0.0001948709,0.0001152389],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00026453,"about_ca_system_score_gemma":0.00009782653,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007378823,"about_ca_topic_score_gemma":0.001140646,"domain_scores_codex":[0.9998117,0.00002300446,0.00001636512,0.00008273659,0.00004418211,0.00002201755],"domain_scores_gemma":[0.9996408,0.0001313524,0.0001258626,0.00003933345,0.00003358335,0.00002898558],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000712268,0.00001121914,0.02748234,0.00003335075,0.0000452828,0.00009859331,0.00004713788,0.0003309984,0.9689146,0.00007954885,0.00002048059,0.002865182],"study_design_scores_gemma":[0.00001025875,0.0001333604,0.8978792,0.000007248615,0.00008405643,0.0008939586,0.0001198862,0.005668006,0.09378208,0.0002973964,0.001103438,0.00002111224],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979096,0.0001844795,0.001368883,0.00001087147,0.0000020974,0.000003449536,0.0003113871,0.00002274292,0.0001864323],"genre_scores_gemma":[0.9986186,0.00004814707,0.0007010052,0.000008498356,0.000001880394,0.000004062123,0.0004966521,0.00001095506,0.0001101266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008545581,"threshold_uncertainty_score":0.00191927,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02903921999729671,"score_gpt":0.2224769019732023,"score_spread":0.1934376819759056,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}