{"id":"W4376637663","doi":"10.1101/2023.05.15.23289731","title":"Routine respiratory metagenomics service for intensive care unit patients","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Thomas Hospital","funders":"Medical Research Council; National Institute for Health and Care Research","keywords":"Fastidious organism; Medicine; Intensive care unit; SCCmec; Infection control; Microbiology; Intensive care medicine; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Biology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004298598,0.0006056749,0.0008349268,0.001345674,0.0006893316,0.001219628,0.0009509342,0.0005908358,0.002318912],"category_scores_gemma":[0.009207804,0.0003598351,0.0005058827,0.001488957,0.00058605,0.0005093142,0.001550689,0.0005803367,0.0006732697],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001500249,"about_ca_system_score_gemma":0.001706286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008800812,"about_ca_topic_score_gemma":0.006766866,"domain_scores_codex":[0.9947943,0.002688308,0.0004316034,0.0009189652,0.0007365079,0.0004302688],"domain_scores_gemma":[0.9917762,0.002238468,0.001968373,0.001095021,0.001674919,0.001246992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001143577,0.000144186,0.9671187,0.0002821367,0.0001240366,0.0007642946,0.0008894207,0.0004484719,0.009628673,0.00006005571,0.001541365,0.017855],"study_design_scores_gemma":[0.00009896138,0.001441711,0.9853414,0.0001218552,0.0000869514,0.001008991,0.001597947,0.002085933,0.004930059,0.0001029181,0.003153356,0.00003002726],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900209,0.0008763727,0.002403627,0.00109714,0.00004105152,0.0005884835,0.002784785,0.0002584305,0.001929277],"genre_scores_gemma":[0.9951438,0.0001688763,0.002661799,0.0004236136,0.00007334944,0.0001711651,0.001124585,0.00002728017,0.000205683],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008800812,"threshold_uncertainty_score":0.02273345,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1121851612078333,"score_gpt":0.3444927586392799,"score_spread":0.2323075974314467,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}