{"id":"W4377010363","doi":"10.1186/s12864-023-09369-3","title":"RNA-seq analysis to identify genes related to resting egg production of panarctic Daphnia pulex","year":2023,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science","keywords":"Biology; Daphnia pulex; Daphnia; Gene; Diapause; Genetics; Gene expression; Instar; RNA-Seq; Genotype; Zoology; Ecology; Larva; Transcriptome; Crustacean","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001289724,0.0003119216,0.0004402778,0.0005343031,0.0004050694,0.0004111589,0.0001716036,0.000242086,0.0008608297],"category_scores_gemma":[0.0002267537,0.0001438589,0.000464509,0.0007729425,0.0001614011,0.0001625334,0.0002871707,0.000364871,0.0002901517],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002581383,"about_ca_system_score_gemma":0.0002826998,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002152672,"about_ca_topic_score_gemma":0.004077356,"domain_scores_codex":[0.9998267,0.00000794864,0.000009769446,0.00009020619,0.00003763906,0.0000276762],"domain_scores_gemma":[0.9998622,0.000041545,0.0000352895,0.000008556347,0.00003664051,0.0000158443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005205151,0.00005310598,0.05893243,0.0008065421,0.0001648725,0.0003517774,0.0003509164,0.001058888,0.9224993,0.0001800207,0.001442265,0.01363945],"study_design_scores_gemma":[0.00004596154,0.0002841438,0.8457066,0.00008258541,0.0004420907,0.0006174585,0.0007483183,0.00922771,0.1252124,0.000342508,0.01724028,0.0000498082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9593427,0.002159688,0.005247913,0.0001291175,0.00006626907,0.00006199258,0.03075411,0.0002755734,0.001962716],"genre_scores_gemma":[0.909247,0.001632289,0.01776403,0.000638043,0.00004867274,0.0002971751,0.06560372,0.0001699836,0.004599177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002152672,"threshold_uncertainty_score":0.004280329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02587989101158491,"score_gpt":0.2763554011176584,"score_spread":0.2504755101060736,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}