{"id":"W4377011370","doi":"10.1099/mgen.0.001002","title":"A global survey of Salmonella plasmids and their associations with antimicrobial resistance","year":2023,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"Government of Canada; Public Health Agency; Public Health Agency of Canada","keywords":"Plasmid; Biology; Salmonella; Genetics; Serotype; Salmonella enterica; Horizontal gene transfer; Replicon; Gene; Genome; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005327696,0.000444644,0.0003321128,0.001906824,0.0001914227,0.000458637,0.0001796809,0.0002444045,0.0007223423],"category_scores_gemma":[0.0009336674,0.0001414314,0.0003781515,0.00185381,0.0002447365,0.0004003149,0.0007832611,0.0002627326,0.0003717264],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002181921,"about_ca_system_score_gemma":0.0003174313,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001168219,"about_ca_topic_score_gemma":0.001435104,"domain_scores_codex":[0.999588,0.00007215962,0.00002438249,0.0001543951,0.00008610455,0.00007487038],"domain_scores_gemma":[0.999326,0.0001225848,0.0002090399,0.00007797705,0.0001610988,0.0001033489],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002942933,0.00008061145,0.8015459,0.0002266767,0.0001885869,0.0001656231,0.0005627366,0.001692431,0.1599309,0.0002144992,0.0006059626,0.03449187],"study_design_scores_gemma":[0.000006089524,0.000304006,0.9882507,0.0000137235,0.00006607264,0.0003210968,0.0003921215,0.001399466,0.006844178,0.00008850665,0.002301793,0.00001232129],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941745,0.00024806,0.001983027,0.00001916099,0.000002247432,0.00001572637,0.00290099,0.00005239495,0.0006038703],"genre_scores_gemma":[0.9829698,0.000377926,0.003612924,0.00002551172,0.000007169416,0.00003272732,0.01249853,0.00002541563,0.0004501084],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001906824,"threshold_uncertainty_score":0.002817631,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01142618487166453,"score_gpt":0.2285423272161425,"score_spread":0.217116142344478,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}