{"id":"W4377011669","doi":"10.1128/msystems.01002-22","title":"Metatranscriptomic analysis uncovers prevalent viral ORFs compatible with mitochondrial translation","year":2023,"lang":"en","type":"article","venue":"mSystems","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Science Foundation of Sri Lanka; National Institutes of Health; National Science Foundation","keywords":"Biology; ORFS; Genetics; RNA; Gene; Translation (biology); RNA virus; Computational biology; Open reading frame; Messenger RNA; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001973549,0.0003557019,0.0003098285,0.001015176,0.0001887291,0.0006039421,0.0001817833,0.0003811046,0.0008676652],"category_scores_gemma":[0.000403845,0.0001788345,0.0006609638,0.0005378046,0.0001609294,0.0002954071,0.0003479843,0.0004668196,0.0004700562],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002028591,"about_ca_system_score_gemma":0.0001536005,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000369828,"about_ca_topic_score_gemma":0.0005692532,"domain_scores_codex":[0.9998059,0.0000144305,0.00001770019,0.00006514856,0.00005856996,0.00003834385],"domain_scores_gemma":[0.9996796,0.00007619344,0.0001006663,0.0000373467,0.00005440577,0.00005175191],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000820403,0.00001225865,0.002813152,0.00004025006,0.00001379323,0.00008589546,0.00003500292,0.00004604787,0.9947719,0.00003699225,0.0000226081,0.002040158],"study_design_scores_gemma":[0.00001507701,0.0005096668,0.105131,0.00004850238,0.0002752348,0.002501317,0.0004888477,0.005869377,0.8783135,0.0004341947,0.006369289,0.0000439244],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.988265,0.0009395815,0.007335373,0.00006326149,0.00003165856,0.00004110804,0.002444321,0.0001196629,0.0007599409],"genre_scores_gemma":[0.9835226,0.0005233975,0.01002353,0.00008846203,0.00002196306,0.00002768692,0.004869058,0.00008439529,0.0008389159],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001015176,"threshold_uncertainty_score":0.002902627,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05071470600446794,"score_gpt":0.2625702813536305,"score_spread":0.2118555753491626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}