{"id":"W4377092853","doi":"10.1371/journal.ppat.1011318","title":"The cell envelope of Mycobacterium abscessus and its role in pathogenesis","year":2023,"lang":"en","type":"review","venue":"PLoS Pathogens","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Mycobacterium abscessus; Virulence; Cell envelope; Pathogenesis; Microbiology; Efflux; Biology; Secretion; Pathogen; Envelope (radar); Cystic fibrosis; Mycobacterium; Immunology; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006502843,0.0004668401,0.001904127,0.0003984066,0.0001014637,0.00005264511,0.0003303334,0.0003757499,0.00007809373],"category_scores_gemma":[0.00079529,0.0003013414,0.0003783932,0.0008312671,0.00008262681,0.00005393449,0.0003371374,0.0004813202,0.0002868881],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009341413,"about_ca_system_score_gemma":0.0005730304,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002548179,"about_ca_topic_score_gemma":0.00003555383,"domain_scores_codex":[0.9969267,0.0003176534,0.0009213924,0.0005839619,0.0005574177,0.0006928354],"domain_scores_gemma":[0.997314,0.001183527,0.0003357442,0.0006450014,0.0001786268,0.0003431518],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001764129,0.0008368746,0.004253187,0.1665563,0.0007517241,0.001496502,0.0004325617,1.436903e-7,0.009504481,0.00007652721,0.0007525808,0.8151627],"study_design_scores_gemma":[0.0009067627,0.0004401928,0.0069048,0.02190976,0.002164492,0.000078989,0.0001667501,0.00002099004,0.001254687,0.00003044956,0.9654218,0.0007003155],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01315217,0.9831747,1.38303e-7,0.00006055434,0.0001176499,0.001614095,0.000800379,0.00005325267,0.001027107],"genre_scores_gemma":[0.0007298853,0.9971857,0.00004337781,0.00002011483,0.0002088803,0.0005499801,0.0001845726,0.0001256359,0.0009518533],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9646692,"threshold_uncertainty_score":0.9999439,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06453241758298887,"score_gpt":0.322814321936782,"score_spread":0.2582819043537931,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}