{"id":"W4377233646","doi":"10.1158/1940-6207.capr-23-0051","title":"Polymorphisms in the Nonhomologous End-joining DNA Repair Pathway are Associated with HPV Integration in Cervical Dysplasia","year":2023,"lang":"en","type":"article","venue":"Cancer Prevention Research","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Centre for Applied Research in Cancer Control; BC Cancer Agency","funders":"National Cancer Institute; National Institutes of Health; Cancer Prevention and Research Institute of Texas","keywords":"Squamous intraepithelial lesion; Single-nucleotide polymorphism; Dysplasia; Biology; Cervical cancer; SNP; DNA repair; Genotyping; Cancer; Oncology; Genotype; Gene; Genetics; Cancer research; Medicine; Cervical intraepithelial neoplasia","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.005124779,0.0001622842,0.000345045,0.0008108196,0.0001786475,0.00006356021,0.0002852073,0.0002033837,0.003278226],"category_scores_gemma":[0.0009017888,0.0001104463,0.0001150765,0.003994425,0.0002263753,0.0001276374,0.0001323006,0.001563113,0.00008836612],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008691172,"about_ca_system_score_gemma":0.0007864425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001066454,"about_ca_topic_score_gemma":0.01789406,"domain_scores_codex":[0.9954557,0.001161532,0.0004085794,0.0005224761,0.001614726,0.0008369662],"domain_scores_gemma":[0.9983081,0.0006238794,0.00007095443,0.0004171958,0.0004285775,0.0001512808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003941411,0.001642117,0.5995052,0.0005180044,0.0002042565,0.003018875,0.006944462,0.0001608807,0.00288763,0.002036317,0.01301519,0.3661256],"study_design_scores_gemma":[0.002485178,0.0006781635,0.9896653,0.0004794243,0.00001256412,0.00001607612,0.002082225,0.002061806,0.0007760432,0.0007444356,0.0008717815,0.0001269557],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9742101,0.0006163335,0.00003641448,0.008548097,0.0001022928,0.001635593,0.00002865909,0.0001617402,0.01466081],"genre_scores_gemma":[0.9943388,0.0002687385,0.00001922637,0.000249377,0.0001662101,0.001080631,0.0001464375,0.00003323981,0.0036973],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3901601,"threshold_uncertainty_score":0.9985304,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1086509345934514,"score_gpt":0.4105488232555924,"score_spread":0.301897888662141,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}