{"id":"W4377294677","doi":"10.3390/pathogens12050740","title":"Mapping the Dynamics of Contemporary PRRSV-2 Evolution and Its Emergence and Spreading Hotspots in the U.S. Using Phylogeography","year":2023,"lang":"en","type":"article","venue":"Pathogens","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute for Translational Neuroscience; National Institute of Food and Agriculture; Biotechnology and Biological Sciences Research Council; University of Minnesota","keywords":"Evolutionary biology; Phylogeography; Lineage (genetic); Biology; Evolutionary dynamics; Population; Microevolution; Phylogenetics; Genetics; Demography; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003755347,0.00006489894,0.00008298516,0.00002706223,0.0003036883,0.00001273696,0.00007614435,0.00002856382,0.000003048696],"category_scores_gemma":[0.0000523408,0.0000211332,0.00002964663,0.0008537983,0.00008736235,0.00005012492,0.00008186763,0.00006045188,9.87226e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007240876,"about_ca_system_score_gemma":0.000002519854,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002913759,"about_ca_topic_score_gemma":0.0006896048,"domain_scores_codex":[0.9994729,0.0000808678,0.0001191367,0.0001263026,0.00008081819,0.0001199873],"domain_scores_gemma":[0.9997168,0.0001624642,0.00005496832,0.00002687265,0.00002689325,0.00001197759],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000006757344,0.00001601073,0.7703454,0.00001406737,0.00001254614,0.00000293153,0.001297559,0.0000144107,0.2231017,0.001422405,0.00002486415,0.003741321],"study_design_scores_gemma":[0.00002576356,0.00004141583,0.9860866,0.00002064167,0.000004764851,0.000005442357,0.007973785,0.005168308,0.00005672151,0.0004945275,0.00006758056,0.0000544627],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976704,0.00142728,0.00001196516,0.0003341007,0.00003868635,0.0001690875,0.00004433556,0.00001784125,0.0002863206],"genre_scores_gemma":[0.999596,0.0003204792,0.00001139458,0.00002442648,0.00002941452,0.000009401817,0.000003380326,5.005672e-7,0.000004976031],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.223045,"threshold_uncertainty_score":0.2335756,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08089362818500552,"score_gpt":0.2534373470338084,"score_spread":0.1725437188488029,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}