{"id":"W4377691661","doi":"10.1101/2023.05.22.541756","title":"Soybean-SCN duel: Novel insight into Soybean’s Resistant Responses to <i>Heterodera glycines</i>","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Agriculture and Agri-Food Canada; Ministry of Agriculture, Food and Rural Affairs; University of Guelph","funders":"Agriculture and Agri-Food Canada; University of Illinois at Urbana-Champaign; Ontario Ministry of Agriculture, Food and Rural Affairs; Ministry of Agriculture, Food and Rural Affairs; Grain Farmers of Ontario","keywords":"Soybean cyst nematode; Heterodera; Biology; Phenylpropanoid; Transcriptome; Plant disease resistance; Virulence; Signal transduction; Gene; Jasmonic acid; Effector; Genetics; Cell biology; Nematode; Gene expression; Biosynthesis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000666975,0.0007698022,0.0008094359,0.0001763876,0.0006183787,0.0006341653,0.0009884157,0.0003941766,0.00008529411],"category_scores_gemma":[0.0003173019,0.0004146077,0.0002516146,0.001245981,0.0001097802,0.0002071373,0.001884235,0.0004724686,0.0004031064],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001607361,"about_ca_system_score_gemma":0.00006780688,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001888691,"about_ca_topic_score_gemma":0.0001399436,"domain_scores_codex":[0.9960902,0.0001593203,0.0008220322,0.001506992,0.0006810324,0.0007403776],"domain_scores_gemma":[0.9978894,0.0002356892,0.0004421143,0.0005708852,0.0005302245,0.0003317012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002074179,0.0001400528,0.003424211,0.0001774357,0.00014378,0.00004700542,0.00005041629,0.000005559906,0.9923106,0.0004115169,0.003076103,0.000005876027],"study_design_scores_gemma":[0.0005645572,0.0002558284,0.6915134,0.0007954245,0.0001735237,1.94741e-8,0.00005641663,0.0000494363,0.133242,0.00001593905,0.1712192,0.00211431],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886336,0.0002841821,0.0002354637,0.006460834,0.00148798,0.001097721,0.0005573716,0.001205202,0.0000376253],"genre_scores_gemma":[0.9954651,0.0002274272,0.0008919412,0.001704861,0.0009950437,0.0004187741,0.000005597374,0.00003141794,0.0002598318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8590687,"threshold_uncertainty_score":0.9998306,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03319449508360127,"score_gpt":0.2303482487875836,"score_spread":0.1971537537039823,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}